Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03392 ATGGGATGTGTCAATACCAAATATTCTTCTCCTGTTGGAAACGCTGAGAGAAGACTGAAACGAAACAAAGAAGATGCACCCAAACCACTCACCCACAATCTCAACAAGCACCATTCATCTAAAAAGCAAGAGGGAGTGAGGTTGAAAGAAAAGATAGAAAGAGTAGTGTCCAGTGAAAAAGAAAGAGATAATACTAATAGTGAGGTAAAGGGTATTGCTAGAAACGATGACAGGAGTGACGAGGTTGGTGATAATGTTCCTCAGAGATCTCAAGAAAAGAAGAACATTGGTGCACGCTCTGAGTTTGTGGAGGGTTGGCCAAAATGGCTAGCTGATAATATCCCACCAAACGTGTTGGATACCTTGGTTCCCAAGAGTGTTGATTCCTTTGAAAAACTTGGAAAGGTGGGGCACGGAACATATAGCAATGTATACAAAGCCAGAGACAAGGAGAGTGGAAAGATTGTTGCTTTGAAGAAGGTAAGATTTGACACATCAGATCCTGAAAGCATAAAGTTTATGGCAAGAGAGATAATGATACTGCAGAATCTGGATCATCCCAATGTCATCAAACTGCAAGGACTTGCAACATCAAGGATGCAGTATAGTCTTTATCTGGTTTTTGATTACATGCACTCTGACCTTACAAGAATTATCTCTCGCCCCAGGGACAAACTCACTGAACCACAGATCAAGTGTTATATGCAGCAACTGCTTCTGGGGCTTCAGCATTGTCACGAGAGAGGAGTTGTGCATAGAGATATTAAACCTTCCAACTTGTTAGTAGACAAAAAAGGGGTGCTAAAAATTGCAGATTTTGGGCTAGCAAAGTCTTTTGCTATCAATCCTGAAGGGCCTTTCACAAATAAAGTGGTGACACTTTGGTATAGAGCTCCTGAACTTCTTTTAGGTTCAACAGATTATGGATTTGAAATTGATCTCTGGAGTGCAGGATGCCTGTTGGCAGAGATGTTCCTTGGAAGACCAATTATGCCCGGGAGAACAGAGGTTGAACAACTTCACATGATCTTCAAACTTTGTGGTTCACCTTCTGAGGATTATTGGATGAAAATGAAGCTAATGACAAGCCTCTTTCCACCACTACAGTACAAAGCTAATTATGATGAAAACTTTAAGAATTTTCCTTCCTCTGCTTCTGCTCTCTTGACTACACTTCTTCATCTAGATTCTCAGGCACGTGCCACTGCTGCTTATGCTCTTCAAAGCCAATTCTTCAAGTCAAGTCCATTAGCGTGCAACATTTCATCGCTATCACTAATATTCAAAGAAGATGAACATCAACAAATAAAGAGACGCAAAAGGCGAAAGGGTTTGAAAAAGAAAGGGTATGTTTGTGAAACAAATACATGCAATATGAACCAATCACGAAAGAACATTACTTGGGAACAAAGCAGAAGAGATTCAGAATCATCCAAAGAGATATTTCAACAGCTTGACTTGACTGTTAAAGAATGTGGCAGAAGACATGAAAGGTGA 1497 0.4035 MGCVNTKYSSPVGNAERRLKRNKEDAPKPLTHNLNKHHSSKKQEGVRLKEKIERVVSSEKERDNTNSEVKGIARNDDRSDEVGDNVPQRSQEKKNIGARSEFVEGWPKWLADNIPPNVLDTLVPKSVDSFEKLGKVGHGTYSNVYKARDKESGKIVALKKVRFDTSDPESIKFMAREIMILQNLDHPNVIKLQGLATSRMQYSLYLVFDYMHSDLTRIISRPRDKLTEPQIKCYMQQLLLGLQHCHERGVVHRDIKPSNLLVDKKGVLKIADFGLAKSFAINPEGPFTNKVVTLWYRAPELLLGSTDYGFEIDLWSAGCLLAEMFLGRPIMPGRTEVEQLHMIFKLCGSPSEDYWMKMKLMTSLFPPLQYKANYDENFKNFPSSASALLTTLLHLDSQARATAAYALQSQFFKSSPLACNISSLSLIFKEDEHQQIKRRKRRKGLKKKGYVCETNTCNMNQSRKNITWEQSRRDSESSKEIFQQLDLTVKECGRRHER* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03392 498 ProSiteProfiles Protein kinase domain profile. 130 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g03392 498 Gene3D Transferase(Phosphotransferase) domain 1 213 452 - -
Lapu3g03392 498 Coils Coil 48 68 - -
Lapu3g03392 498 CDD STKc_CDK9_like 130 412 - -
Lapu3g03392 498 FunFam probable serine/threonine-protein kinase At1g54610 117 212 - -
Lapu3g03392 498 SUPERFAMILY Protein kinase-like (PK-like) 124 416 IPR011009 -
Lapu3g03392 498 PANTHER CELL DIVISION PROTEIN KINASE 128 417 - -
Lapu3g03392 498 SMART serkin_6 130 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g03392 498 Pfam Protein kinase domain 130 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g03392 498 Gene3D Phosphorylase Kinase; domain 1 119 212 - -
Lapu3g03392 498 MobiDBLite consensus disorder prediction 14 97 - -
Lapu3g03392 498 MobiDBLite consensus disorder prediction 1 97 - -
Lapu3g03392 498 ProSitePatterns Serine/Threonine protein kinases active-site signature. 250 262 IPR008271 GO:0004672|GO:0006468
Lapu3g03392 498 FunFam Mitogen-activated protein kinase 211 417 - -
Lapu3g03392 498 ProSitePatterns Protein kinases ATP-binding region signature. 136 159 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03392 Lapu-Chr3 57158425 57163605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03392 115 443 Core Cell Cycle Gene Families AT5G10270 44.957 2.14e-93 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lapu3g03392 Pkinase 2.4e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03392 K08819 - gmx:102667260 698.353