Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03369 ATGGCGCCCACGCAGAGAACGCGTAAGGTTAGCAGAAACCCTGAATTGATAAGGGGCATTGGAAAGTATTCGAGATCGCAGATGTATCACAAGAAGGGTATTTGGGCTATCAAGGCTAAAAACGGCGGCGTTTTCCCTCGCCACTACCCTACTCCCAAACCTGAAACTCCCGCTTTAAAATCTCCCAAATTCTACCCTGCTGACGATGTTAAGAAACCCCTTCTTAACAAGCACAAATCCAAACTCACTAAGCTCAGGGATAGCGTTACGCCTGGGACAGTGTTGATTCTTCTTGCTGGTAGATTCAAGGGAAAGCGGGTAGTGTTTCTGAAGCAGCTTCCTTCTGGGTTGCTTCTTGTAACTGGTCCTTTCAAGATCAACGGAGTTCCATTGAGACGGGTCAACCAGTCATATGTTATTGGCACATCAACCAAAGTAGATGTTTCTGCTGTTAACGTGGACAAATTTGATGACAAATACTTTTCAAAGGAGTCCCAGAAAAAGAAGAAGGGAGAGGGCGAGTTTTTCGAGGCAGAGAAGGAGGAAAAGAGTGTGTTGCCCCAGCAGAAGAAAGATGACCAGAAAACTGTGGACTCTGCGTTGATAAAAGCCATCGAGAGTGTTCCGGACTTGAATGCTTATCTGGGTGCAAGGTTTTCCCTAAAGGCTGGTGTGAAACCTCACGAGCTAGTCTTTTAG 699 0.4621 MAPTQRTRKVSRNPELIRGIGKYSRSQMYHKKGIWAIKAKNGGVFPRHYPTPKPETPALKSPKFYPADDVKKPLLNKHKSKLTKLRDSVTPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQSYVIGTSTKVDVSAVNVDKFDDKYFSKESQKKKKGEGEFFEAEKEEKSVLPQQKKDDQKTVDSALIKAIESVPDLNAYLGARFSLKAGVKPHELVF* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03369 232 SUPERFAMILY Translation proteins SH3-like domain 86 177 IPR008991 -
Lapu3g03369 232 PANTHER 60S RIBOSOMAL PROTEIN L6 6 232 IPR000915 GO:0003735|GO:0005840|GO:0006412
Lapu3g03369 232 Gene3D - 87 170 IPR014722 -
Lapu3g03369 232 Pfam Ribosomal protein L6e 126 232 IPR000915 GO:0003735|GO:0005840|GO:0006412
Lapu3g03369 232 FunFam 60S ribosomal protein L6 87 171 - -
Lapu3g03369 232 CDD KOW_RPL6 81 232 IPR041997 -
Lapu3g03369 232 Pfam Ribosomal protein L6, N-terminal domain 5 57 IPR005568 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03369 Lapu-Chr3 56929451 56931210 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03369 1 232 Cytoplasmic Ribosomal Protein Gene Family AT1G74050 76.824 4.42e-114 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03369 K02934 - gmx:100500022 387.497