Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03362 ATGACAGGGAAGAGAAACCAAACAACAATCAGTCCTGTGGGAAGTCCAACATCTGGTAACATATCAGACAGCTCCTCAAAAGAACAAGACAGGTTCCTCCCCATAGCCAATGTTAGCCGCATCATGAAAAGGGCACTCCCAGCCAATGCCAAAATCTCAAAGGAAGCCAAAGAAACAGTTCAAGAGTGTGTGTCTGAGTTCATTAGCTTCATCACTGGTGAGGCCTCAGACAAGTGCCAGAGGGAAAAGAGGAAGACCATCAATGGTGATGATCTTCTTTGGGCCATGACAACCCTAGGATTTGAGAACTATGTTGGACCCTTGAAGCTCTACCTCAACAACTACAGGGAAACTGAGGGAGAAAAGAGTTCCATGGCCAAACAAGAAGAACACTCTCCAACTGATCAAACTCATCAAACCAATGATGGGGTGGCTGAACTCAACAAGTTGCCTCATTCTGTTTCCATCAAAGCAGACTTCAACACTTTCAGTGGTGGCTTCTATTCTGTGGGGCCACAACCAACAGCTCCGAAGAGCTTCACAGATATTGGAGGGATCAACGGTTATAGAGAGAACTCCATGAACAGTGTCATTGCTCAAAGTGCGGTCAGTGGTGATCAAGATGCAAGTGGTAATAGAATGATTCCACCCAACCTACGTTATAGGGTTGAATGGTAG 678 0.4572 MTGKRNQTTISPVGSPTSGNISDSSSKEQDRFLPIANVSRIMKRALPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKLYLNNYRETEGEKSSMAKQEEHSPTDQTHQTNDGVAELNKLPHSVSIKADFNTFSGGFYSVGPQPTAPKSFTDIGGINGYRENSMNSVIAQSAVSGDQDASGNRMIPPNLRYRVEW* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03362 225 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 20 142 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lapu3g03362 225 MobiDBLite consensus disorder prediction 1 29 - -
Lapu3g03362 225 SUPERFAMILY Histone-fold 29 140 IPR009072 GO:0046982
Lapu3g03362 225 ProSitePatterns NF-YB/HAP3 subunit signature. 63 79 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lapu3g03362 225 MobiDBLite consensus disorder prediction 121 141 - -
Lapu3g03362 225 FunFam Nuclear transcription factor Y subunit B-3 21 145 - -
Lapu3g03362 225 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 32 96 IPR003958 -
Lapu3g03362 225 Gene3D Histone, subunit A 19 150 IPR009072 GO:0046982
Lapu3g03362 225 MobiDBLite consensus disorder prediction 121 136 - -
Lapu3g03362 225 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
Lapu3g03362 225 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
Lapu3g03362 225 PRINTS CCAAT-binding transcription factor subunit A signature 60 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03362 Lapu-Chr3 56880371 56881402 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03362 23 129 CCAAT-HAP3 Transcription Factor Family AT4G14540 83.178 1.21e-63 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lapu3g03362 CBFD_NFYB_HMF 1.3e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03362 K08065 - gmx:100810059 377.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03362 3 56880371 56881402 Lapu3g03362 3 56880371 56881402 ECH