Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03352 ATGGATGCTTCATCCTCACAGTTTGTTTCCTCAAGAAGAATGGAAGTGTATGATCCTATCCACCAAATTAGCTTGTGGGAAGAAAATTTCAAAAGTAATGCTAATACTTTAACTGCATCCACCTCCATAATTGAAGAGCTGGACATGAAGTTAGATAATCAAGTTCAGGTGCTGTCAGAGGAGGTTTCTCGTGGACTATTTGGAACATCTGTGAAGTACGACCAAGCTGATAATAGGCTAACTGATAAGACACAAAGACGTCTTGCACAAAATCGAGAGGCTGCTCGTAAGAGTCGTTTAAGGAGAAAGGCATACGTGCAGCAGTTGGAATCATGTCGTTTAAAGTTGATGCAGTTAGAGCAAGAGGTAGATCATGCTAAACGACAGGGATTGTATATTGGTGACGGATTGGGTTCTAATAATTTGGGTTTTGCTGGCTCTGTAAATTCAGGAATAACAATTTTTAAGATGGAGTATGGACATTGGGTAGAGGAGCAAAATAGACATATCTTGGAACTGAGAACTGCTTTAAGTTCTCATTTAGGTGACGGACAACTGGGGACACTTGTACAAAGCATAATGAACCACTACTCCAAACTCTTTAGCATGAAATCTGCTGCCGCAAAAGCAGATGTGTTCTACGTTATGTCTGGTATGTGGATGACAACAGCTGAACGATTTTTCTTGTGGATTGGAGGATTTCGCCCCTCTGAACTTCTAAAGGTTCTGATCCCTCTGAGTGAACCCTTGACAGAGCAACAACGGTTTGATACATATGGCCTAGAAAAATCATGCCAACAAGCAGAAGATGCCCTTTCACAAGGTATGGAAAAACTTCAGCAAATGCTTGCCGAAAGTGTTGGGCCAGGACACCTGGTTGAAGGAACTCACATTCCTCAGATGGATACTGCAATGGAGAGGCTGGAAGCTCTGGTGAGCTTTGTGAACCAGGCTGATCATCTACGACAAGAAACCTTGCGACAAATGTATCGAATACTTACCATACATCACATTGGTCAGTTTCTGCTTGTTCTTGGAGAATATTTTCAACGGTTAAGAGCTTTGAGCAAACTCTGGGCTGATCGTTCTCAAGAACAACTTCCTTAG 1107 0.421 MDASSSQFVSSRRMEVYDPIHQISLWEENFKSNANTLTASTSIIEELDMKLDNQVQVLSEEVSRGLFGTSVKYDQADNRLTDKTQRRLAQNREAARKSRLRRKAYVQQLESCRLKLMQLEQEVDHAKRQGLYIGDGLGSNNLGFAGSVNSGITIFKMEYGHWVEEQNRHILELRTALSSHLGDGQLGTLVQSIMNHYSKLFSMKSAAAKADVFYVMSGMWMTTAERFFLWIGGFRPSELLKVLIPLSEPLTEQQRFDTYGLEKSCQQAEDALSQGMEKLQQMLAESVGPGHLVEGTHIPQMDTAMERLEALVSFVNQADHLRQETLRQMYRILTIHHIGQFLLVLGEYFQRLRALSKLWADRSQEQLP* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03352 368 Pfam bZIP transcription factor 82 111 IPR004827 GO:0003700|GO:0006355
Lapu3g03352 368 Pfam Seed dormancy control 170 244 IPR025422 GO:0006351|GO:0043565
Lapu3g03352 368 FunFam BZIP family transcription factor 82 131 - -
Lapu3g03352 368 SUPERFAMILY Leucine zipper domain 83 124 IPR046347 GO:0003700|GO:0006355
Lapu3g03352 368 Coils Coil 102 129 - -
Lapu3g03352 368 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 86 101 IPR004827 GO:0003700|GO:0006355
Lapu3g03352 368 ProSiteProfiles DOG1 domain profile. 152 362 IPR025422 GO:0006351|GO:0043565
Lapu3g03352 368 Coils Coil 265 285 - -
Lapu3g03352 368 PANTHER TRANSCRIPTION FACTOR TGA9 3 365 - -
Lapu3g03352 368 Gene3D - 82 131 - -
Lapu3g03352 368 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 81 111 IPR004827 GO:0003700|GO:0006355
Lapu3g03352 368 SMART brlzneu 79 139 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03352 Lapu-Chr3 56803608 56811024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03352 1 365 Calmodulin-binding Proteins AT5G10030 63.488 1.14e-164 463
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lapu3g03352 DOG1 1.3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03352 K14431 - gmx:100780003 637.106