Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03350 ATGACCCATTCTTCTCCTCTTATCCCTCCACCTCTGGTCACAGAGATCGACCTTGAAGCTGCTTCCTCCCAACAAATTCAGTGCCGGATTTGTCTTGAAACTGATGGTAGAGATTTCATTGCTCCTTGCAAATGCAAAGGGACGTCAAAGTATGTACATCGAGAGTGTTTGGATCATTGGCGAGCGGTTAAGGAAGGGTTTGCATTTGCTCACTGCACTACCTGCAAGGCTCCATACCATTTACGTGTTCATGATGCTTACAGAAAATGGCGTACTTTCAAATTTCGATTTTTTGTAACCAGAGACATTTTGTTTATATTTCTGGCTGTACAGCTTGTAGGTCATTTCTTCACTGGCCTATTTGGTTTATCTAATAGATGGTTTAGCAGCAGTATTGGCTTCGTCTTCGTTGGGGTTTTGATAGTGTGTTGA 432 0.4259 MTHSSPLIPPPLVTEIDLEAASSQQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVKEGFAFAHCTTCKAPYHLRVHDAYRKWRTFKFRFFVTRDILFIFLAVQLVGHFFTGLFGLSNRWFSSSIGFVFVGVLIVC* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03350 143 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 16 121 - -
Lapu3g03350 143 SUPERFAMILY RING/U-box 23 80 - -
Lapu3g03350 143 Pfam RING-variant domain 28 75 IPR011016 GO:0008270
Lapu3g03350 143 ProSiteProfiles Zinc finger RING-CH-type profile. 20 82 IPR011016 GO:0008270
Lapu3g03350 143 CDD RING_CH-C4HC3_MARCH 28 76 - -
Lapu3g03350 143 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 88 IPR013083 -
Lapu3g03350 143 SMART ringv_2 27 76 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03350 Lapu-Chr3 56782586 56786593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03350 5 113 C3H Transcription Factor Family AT2G22120 83.333 7.71e-61 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03350 - - gmx:100803480 214.927