Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03348 ATGACAAGGTCTGTGTGTGAGTTCTTGTATGAGCTCTATGCCAAGACAATAGTCCTTGTAACATACATGCTAATAGAACTTATCCTTATCATTCGCTACCTTAAGTCAAGAACACCTCCAATATCAACTACCCAATACCTCAGTTTCATCGAAGAGAAGAACCCCACCATTCGTTGCACCAGAAGACTCAAGGCAGAGCACATAGACTGCAGAGTGTGCCTCTCTGAATTCCAGGAAGGGGAGAAGGTGAGGAACCTCAACTGCAGACACACTTTTCACAAGGATTGCTTGGACCAGTGGTTGCAGCAATACTGTGCTACTTGCCCACTTTGCAGGCACAAGGTCTTGCCAGATCATGTTGTGGCCAACTACAACCTCCTTCAAAATCAGGTACAAGAAGAAGAAGAGTATGATGGCAATGATCACCAACTCATTTTTTTGTTATCTGCATTAAGGGGTGGTAGCACTTTGCACACATATCTTTGA 486 0.4403 MTRSVCEFLYELYAKTIVLVTYMLIELILIIRYLKSRTPPISTTQYLSFIEEKNPTIRCTRRLKAEHIDCRVCLSEFQEGEKVRNLNCRHTFHKDCLDQWLQQYCATCPLCRHKVLPDHVVANYNLLQNQVQEEEEYDGNDHQLIFLLSALRGGSTLHTYL* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03348 161 SMART ring_2 70 111 IPR001841 -
Lapu3g03348 161 Pfam Ring finger domain 69 112 IPR001841 -
Lapu3g03348 161 SUPERFAMILY RING/U-box 48 123 - -
Lapu3g03348 161 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 117 IPR013083 -
Lapu3g03348 161 ProSiteProfiles Zinc finger RING-type profile. 70 112 IPR001841 -
Lapu3g03348 161 PANTHER - 4 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03348 Lapu-Chr3 56773244 56775156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03348 69 122 C3H Transcription Factor Family AT1G15100 57.407 6.44e-18 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03348 K16282 - gmx:102669811 274.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03348 3 56773244 56775156 Lapu3g03348 3 56773244 56775156 ECH
Lapu3g03348 3 56773244 56775156 Lapu6g00183 6 1538829 1539990 PCT