Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03344 ATGCATTGTGGCATTATGCGTGGGAAAAAGAAAAAGAAACTGAATCAACAAATTGAAAGAAATGGTGATAGGAATACTCAAGATTCAGAGCCCCCAACTCCACATTCTGTTCTGAAGATGGGATTTAGAGAGCGTAACAGCAGCATGGAGGATCCAGATGGAACATTAGCTAGTGTTGCCCAATGCATTGAGCAGCTGCGTCAGAGCTCTTATTCTGTGCAGGAGAAAGAGTATTCCTTAAGGCAGCTATTGGAGCTTATAGACATGCGTGAAAATGCTTTTAGTGCAGTTGGATCACACTCTCAGGCAGTTCCAGTACTTGTTTCCCTTCTCAGGTCTGGTTCGTTGAATGTGAAGATACAGGCAGCAACCGTGTTGGGATCCCTTTGTAAAGAAAATGAGCTAAGGGTGAAAGTCTTGCTTGGAGGATGCATTCCTCCATTGCTTGGTCTATTAAGGTCCAGTTCTACTGAAGGACAAATTGCTGCTGCAAAGACTATTTATGCTGTCTCTCAGGGTGGTGTAAAAGATCATGTTGGTTCAAAAATATTTTCAACTGAAGGAGTTGTACCGGTGCTCTGGGAGCAGCTGAAAACTGGCCTGAAGGCAGGAAATGTAGTTGAAGGTTTATTGACTGGTGCATTGAAAAATCTCTCCAGCAACACTGAGGGATTTTGGAATGCAACTATACGAGCTGGAGGGGTGGACATATTAGTGAAGTTACTGGCAAAAGGACAGCCCAGCAGTTTAGCCAATGTGTGCAATTTACTTGCTTCTGTAATGATGGAGGATGCATCTGTATGTCCAAAGGTGTTGACAGCGGAGGTGACAAAACAACTTCTGAAACTATTAGGCCCTGGTAATGATGACTCGGTTAGAGCTGAAGCAGCTGGTGCTCTTAAATCTCTTTCTGCCCAGTGCAAAGAGGCAAGGCGAGAGATAGCCAATGCTAATGGTATTCCTTCTCTGATCAATGCTACCATAGCTCCTTCCAAAGAATTCATGCAGGGTGAGTGTGCTCAAGCATTACAGGAGAATGCTATGAGTGCTCTAGCAAATATCTCTGGTGGTTTGTCTTATGTCATATCTAGCCTTGGTCAAAGTCTTGAATCATGCACCTCACCTACCCAAATTGCTGACACATTAGGAGCTTTAGCATCAGCTCTCATGATATATGATAACAAGGCAGAATCAACCAGAGCATCGGATCCTTTGGTTGTTGAGCAGACATTACTCAAACAATTTGAAGCTCGGTTGCCATTCCTTGTACAGGAACGAACCATTGAAGCGCTTGCCAGTTTGTATGGAAATTCTGTACTTTCAAATAAACTTGCAAATGCTGATGCAAAACATCTACTAGTTGGTTTGATAACAATGGCTGCAAATGAAGTGCAAGATGAGCTTATAAAAGCTCTGTTGACAGTGTGCAAAAGCGAAGGCAGTCTATGGCGTGCACTTCAGGGTCGTGAAGGAGTTCAACTATTGATATCTCTTTTGGGGCTTTCATCAGAACAGCAACAAGAGTGTGCAGTTGCCCTCCTATGCCTTCTATCATATGAAAATGATGAAAGTAAATGGGCAATTACTGCAGCTGGTGGCATACCTCCACTTGTTCAAATTTTGGAGACAGGATCAGCAAAAGCAAAGGAAGATTCAGCAACAATCCTTAAGAACCTGTGCAATCATAGTGAAGATATACGTGCTTGTGTTGAAAGTGCTGATGCTGTTCCTGCATTGTTGTGGCTATTGAAGAATGGAAGCCCAAATGGGAAGGATATTGCTGCAAAGACTTTAAATCATTTAATTCATAAATCTGATACTACAACCATTAGTCAGCTTACAGCTTTATTGACTAGTGATCTTCCTGATTCTAAGGTTTATGTTTTGGATGCTTTGAGAAGTATGCTTTCTGTTGCTCCCCTTAGTGACATTTTACGTGAAGGTAGTGCTGCCAGTGATGCATTTGATACTATGATAATATTATTGAGCTCTGCCAAAGAAGAAACTCAGGCAAAGTCTGCATCAGCCCTAGCAGGAATTTTTGAAACAAGAAAAGACGTGCGTGAAAGTAGCATTGCTGTCAAAACTCTTTTGTCAGCCAAGAAATTGCTCAATGCTGAATCTGAAAGTATCCTGATTGAGTCGTCCCACTGCCTGGCTGCAATATTTCTTTCCATTAAAGAGAACAGGGATGTAGCAGCCATCGCTAGAGACACATTATCCCCTCTTGTTTCACTAGCAAACTCTTTAGTTTTAGAAGTTGCAGAGATGGGCACGTGTGCTCTGGCAAACCTTATCTTGGATAGTGAAATTGCAGAGAAATCTATTGCAGAAGAAGTTATCTTACCTGCTACTAGAATATTATGTGAAGGCACAATTTCTGGAAAAACTCATGCTGCAGCAGCAATTGCTCGCCTCCTACATTCTCGGGATGTTGATTATGCTGTGATTGATTGTGTGAATCGTGCTGGGACTGTTCTTGCATTAGTTTCTTTCTTAGATTCTGCTGTTAATGGATCTGTTGCTACATCAGAGGCTCTAGAAGCAATTGCCATCCTGTCCAGGTCGGTTGACACTAGTACAAATACTAAATCTGCTTGTGCTGTTTTAGCTGAATTCCCTAAAAGCATAAGCCCAATAGTCTTGTGTATTGTTGATTCGGAGCCAATGTTACAAGATAAAACTATTGAGATTTTATCTCGATTATGTAAGGATCAGCCTGTTGTTTTAGGAGATACCATTGTGTCAGCACCTGGATGTATATCTTCAATAGCTAAGAGGATAATAAGTTCCACAAATGTAAAGGTCAAAATTGGCGGAGCAGCACTTCTTATTTGTACTTCTAAAGCAAATCACGAGAGACTGGTGGAGGATCTAAGTTCATCAAACTTGTGTGTCAATCTTATTCGATCTCTTGTTGATATTCTTGCTTCTGCACCGCCTTCTTTAGGTTACCTGGATGATGACAACAATGAACTCATTAGCATATGCAGGCACACAACAGAAGAGGCCAACAACTTTGAATCCAACACTAGCACCAACACTATCTGCGGTGTTGACTTGGCGCTATGGCTATTGTGTATTCTTGCTTGTAACAATGAAAAAAATAAAATTGCAATAATGGAGGCTGGAGCAATTGATGTTCTCATTGATAGGATCTCGAATTGTTTCTCGCAATATTCTCAGATTGACTATAAAGAAGATAGCATCATGTGGATTCATGCTTTGTTGTTGGCAATATTATTTCAAAATAGAGATATCATTCGGGCACATCCAACTATGAAATCTGTACCAGCACTGACCAGTTTATTGAAGTCAGAGGAATCAGCAAACAAATATTTTGCTGCACAATCAATAGCTAGCCTTGTCTGTAATGGTAGCAGGGGAACACTCCTATCTGTGGCAAATTCTGGGGCAGCAGGTGGACTTATCTCTTTGCTTGGCTGTGCTGATACTGATATACAGGATCTTCTGGAATTGTCAGAGGAATTTTCTTTGGTGCGTTATCCTGATCAAGTGGCTCTTGAGAGGTTGTTTCGAGTTGAAGATATAAGAGTCGGGGCCACTTCTCGGAAGGCTATACCTGCCTTAGTTGATCTGCTCAAACCAATTCCAGATCGTCCAGGGGCACCATATTTGGCACTTGTGCTTTTGACTCAGCTTGGTAAAGATTGTCCTTCGAATATGAGTGTAATGGTGGAGTCTGGCGCCTTAGAGGCTCTTACGAAGTATCTTTCACTCAGTCCACAAGATGCAACTGAAGAAGCTGCTACAGATCTGCTAGGAATTCTGTTTAGCAGTGCTGAAATACGAAAACATGAATCAGCATTTGGAGCTGTTGCTCAACTTGTAGCTGTGCTACGTTTAGGAGGAAGAGGTTCAAGGTATAGTGCTGCAAAAGCCTTGGAAAGTTTGTTTTCTGCTGACCACATCAGAAATGCAGAGATTGCTCGGCAAGCTGTTCAACCGTTGGTGGAGATTCTCAGTACTGGTTCAGAAAAGGAGCAGCATGCTGCCATTGCTGCATTGTTGGGGTTACTGAGTGAAAACCCGTCAAGAGCTCTTGCTGTTGCAGATGTTGAGAAGAATGCAGTGGAAGTTCTTTGTAGGATCCTTTCATCAAATTGTTCAATGGACCTGAAAGGGGATGCTGCTGAATTATGTTGTGCTCTTTTTGGAAATACAAGGATTCGGTCCACAGCAGCTGCTGCAAGTTGTGTTGAACCTCTGGTATCTCTCCTGGTATCTGAGTTCAGTCCAGCTCAGCTTTCAGTTGTCAGGGCAGTGGATAGGCTTGTTGATGATGAGCAACTGGCTGAATTAGTTGCTGCACATGGTGCAGTCGTTCCTCTAGTTGGCCTACTGTCAGGTACGAATTATATACTACATGAGGCCATTTCCAGAGCTCTAGTCAAGTTGGGAAAAGACAGGCCTGGTTGTAAAATGGAAATGGTAAAAGCTGGAGTTATTGAAAGCGTACTTGACATCTTACACGAAGCACCCGATTATCTATGTGCAACTTCTGCAGAATTGTTGCGTATATTGACTAATAATGCTAGCATAGCTAAAGGACCATCTGCTGCTAAAGTGGTTGAACCATTGTTTTTGTTACTGACAAGGCAGGAATTTGGGCCTGATGGACAGCACAGTGCATTGCAGGTTTTGGTTAATATCTTAGAACATCCACAGTGTCGTGCTGACCATTCATTAACTTCTCGTCAAGTTATTGAGCCACTTATCCCTTTGCTTGATTCTCCGATTTCAGCAGTGCAACAGTTGGCTGCTGAGCTTCTTTCACATCTACTAGTAGAAGAACGCCTGCAGAAGGATCCTGTGACACAGCAAGCAATTGGCCCTCTCATTCGAGTTCTTGGTTCTGGTATACACATATTGCAGCAGAGAGCTGTAAAAGCCCTGGTTAGTATTGCACTAACATGGCCAAACGAAATTGCTAAAGAGGGTGGTGTTATTGAAATTTCCAAAGTGATATTGCAAGCTGATCCTTCCCTTCCTCATGCTTTATGGGAGTCTGCTGCCTCCGTTTTGTCTAGTATTCTGCAGTTTAGCTCTGAATTCTACTTGGAAGTGCCTATTGCTGTATTGGTAAGGTTGCTTCGATCTGGCTCAGAGAGCACGGTTGTTGGTGCTTTAAATGCCCTTCTGGTGCTAGAAAATGATGATGGAACTAGTGCAGAAGCTATGTCGGAAAGTGGAGCTATAGAGGCTCTCTTGGAGCTCCTGCGATCTCATCAGTGTGAGGAAACTGCCGCAAGACTTTTAGAAGTATTGCTGAACAATGTAAAGATTCGAGAAACAAAAGTAACAAAATCAGCTATCGTACCATTATCACAGTACCTTCTGGACCCACAAACTCAAGCACAGCAGGCAAGGTTATTGGCAACTTTGGCTCTTGGGGATCTGTTTCAGAATGAGGGTCTTGCTCGAACAAGTGATGCAGTTTCAGCTTGTCGTGCTTTAGTAAATGTGCTTGAAGACCAACCAACAGAAGAAATGAAAGTTGTAGCCATATGTGCTTTGCAGAATCTTGTGATGTACAGTCGATCAAATAGGAGAGCAGTTGCAGAGGCTGGTGGTGTTCAGGTTGTACTGGATCTGATAGGTTCAAGTAATCCAGAAACATCAGTTCAGGCTGCAATGTTTGTTAAACTTCTCTTCTCAAATAATACTATTCAAGAGTATGCTTCTAGTGAAACATTTTTTGTTCTTATAGCTGCTATTGAAAAAGATTTATGGGCTTCTGGAACTGTGAATGATGAGTATCTGAAAGCCTTAAATTCTCTATTTAGCAACTTCCCAAGACTTAGAGCAACTGAACCAGCTACACTAAGCATTCCCCATCTGGTTACAGCCTTAAAGACAGGTTCAGAAGCTTGTCAGGAAGCAGCATTGGATGCACTTTTCCTGCTCAGACAAGCTTGGTCAGCATGCCCAGCTGAAGTTTCTAGAGCTCAGTCGATTGCTGCTGCAGATGCTATTCCATTGCTGCAGTACTTAATCCAGTCTGGGCCACCTCGGTTTCAGGAGAAAGCAGAATTTTTATTGCAGTGTTTGCCAGGGACATTGGTAGTGATCATCAAACGTGGTAACAATATGAAGCAATCTGTTGGAAACCCAAGTGTTTACTGCAAGCTTACACTTGGCAACACTCCCCCAAGGCAAACCCAGGTGGTTTCAACTGGCCCAAATCCGGAGTGGGATGAGAGCTTTTCATGGACCTTTGAGAGTCCTCCCAAAGGCCAAAAGCTTCATATTTCTTGCAAAAATAAGAGCAAAGTGGGAAAGAGTAAATTTGGGAAAGTAACAATCCAGATTGATCGAGTGGTAATGCTTGGATCAGTAGCTGGAGAGTACGCTTTGTTGCCTCAAAGTAAAAGTGGGCCGCCACGGAATCTAGAAATAGAATTTCAGTGGTCTAACAAGTGA 6444 0.4258 MHCGIMRGKKKKKLNQQIERNGDRNTQDSEPPTPHSVLKMGFRERNSSMEDPDGTLASVAQCIEQLRQSSYSVQEKEYSLRQLLELIDMRENAFSAVGSHSQAVPVLVSLLRSGSLNVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLRSSSTEGQIAAAKTIYAVSQGGVKDHVGSKIFSTEGVVPVLWEQLKTGLKAGNVVEGLLTGALKNLSSNTEGFWNATIRAGGVDILVKLLAKGQPSSLANVCNLLASVMMEDASVCPKVLTAEVTKQLLKLLGPGNDDSVRAEAAGALKSLSAQCKEARREIANANGIPSLINATIAPSKEFMQGECAQALQENAMSALANISGGLSYVISSLGQSLESCTSPTQIADTLGALASALMIYDNKAESTRASDPLVVEQTLLKQFEARLPFLVQERTIEALASLYGNSVLSNKLANADAKHLLVGLITMAANEVQDELIKALLTVCKSEGSLWRALQGREGVQLLISLLGLSSEQQQECAVALLCLLSYENDESKWAITAAGGIPPLVQILETGSAKAKEDSATILKNLCNHSEDIRACVESADAVPALLWLLKNGSPNGKDIAAKTLNHLIHKSDTTTISQLTALLTSDLPDSKVYVLDALRSMLSVAPLSDILREGSAASDAFDTMIILLSSAKEETQAKSASALAGIFETRKDVRESSIAVKTLLSAKKLLNAESESILIESSHCLAAIFLSIKENRDVAAIARDTLSPLVSLANSLVLEVAEMGTCALANLILDSEIAEKSIAEEVILPATRILCEGTISGKTHAAAAIARLLHSRDVDYAVIDCVNRAGTVLALVSFLDSAVNGSVATSEALEAIAILSRSVDTSTNTKSACAVLAEFPKSISPIVLCIVDSEPMLQDKTIEILSRLCKDQPVVLGDTIVSAPGCISSIAKRIISSTNVKVKIGGAALLICTSKANHERLVEDLSSSNLCVNLIRSLVDILASAPPSLGYLDDDNNELISICRHTTEEANNFESNTSTNTICGVDLALWLLCILACNNEKNKIAIMEAGAIDVLIDRISNCFSQYSQIDYKEDSIMWIHALLLAILFQNRDIIRAHPTMKSVPALTSLLKSEESANKYFAAQSIASLVCNGSRGTLLSVANSGAAGGLISLLGCADTDIQDLLELSEEFSLVRYPDQVALERLFRVEDIRVGATSRKAIPALVDLLKPIPDRPGAPYLALVLLTQLGKDCPSNMSVMVESGALEALTKYLSLSPQDATEEAATDLLGILFSSAEIRKHESAFGAVAQLVAVLRLGGRGSRYSAAKALESLFSADHIRNAEIARQAVQPLVEILSTGSEKEQHAAIAALLGLLSENPSRALAVADVEKNAVEVLCRILSSNCSMDLKGDAAELCCALFGNTRIRSTAAAASCVEPLVSLLVSEFSPAQLSVVRAVDRLVDDEQLAELVAAHGAVVPLVGLLSGTNYILHEAISRALVKLGKDRPGCKMEMVKAGVIESVLDILHEAPDYLCATSAELLRILTNNASIAKGPSAAKVVEPLFLLLTRQEFGPDGQHSALQVLVNILEHPQCRADHSLTSRQVIEPLIPLLDSPISAVQQLAAELLSHLLVEERLQKDPVTQQAIGPLIRVLGSGIHILQQRAVKALVSIALTWPNEIAKEGGVIEISKVILQADPSLPHALWESAASVLSSILQFSSEFYLEVPIAVLVRLLRSGSESTVVGALNALLVLENDDGTSAEAMSESGAIEALLELLRSHQCEETAARLLEVLLNNVKIRETKVTKSAIVPLSQYLLDPQTQAQQARLLATLALGDLFQNEGLARTSDAVSACRALVNVLEDQPTEEMKVVAICALQNLVMYSRSNRRAVAEAGGVQVVLDLIGSSNPETSVQAAMFVKLLFSNNTIQEYASSETFFVLIAAIEKDLWASGTVNDEYLKALNSLFSNFPRLRATEPATLSIPHLVTALKTGSEACQEAALDALFLLRQAWSACPAEVSRAQSIAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPGTLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTQVVSTGPNPEWDESFSWTFESPPKGQKLHISCKNKSKVGKSKFGKVTIQIDRVVMLGSVAGEYALLPQSKSGPPRNLEIEFQWSNK* 2148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03344 2147 Gene3D - 44 413 IPR011989 -
Lapu3g03344 2147 Gene3D - 422 609 IPR011989 -
Lapu3g03344 2147 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 1376 1610 - -
Lapu3g03344 2147 CDD C2 2028 2118 - -
Lapu3g03344 2147 SUPERFAMILY ARM repeat 1673 2024 IPR016024 -
Lapu3g03344 2147 Gene3D - 1178 1401 IPR011989 -
Lapu3g03344 2147 Gene3D - 1402 1691 IPR011989 -
Lapu3g03344 2147 Gene3D - 610 818 IPR011989 -
Lapu3g03344 2147 MobiDBLite consensus disorder prediction 1 38 - -
Lapu3g03344 2147 Gene3D C2 domain 2025 2147 IPR035892 -
Lapu3g03344 2147 ProSiteProfiles C2 domain profile. 2007 2124 IPR000008 -
Lapu3g03344 2147 SUPERFAMILY ARM repeat 1093 1649 IPR016024 -
Lapu3g03344 2147 SMART arm_5 264 305 IPR000225 GO:0005515
Lapu3g03344 2147 SMART arm_5 1435 1475 IPR000225 GO:0005515
Lapu3g03344 2147 SMART arm_5 1225 1266 IPR000225 GO:0005515
Lapu3g03344 2147 SMART arm_5 132 172 IPR000225 GO:0005515
Lapu3g03344 2147 SMART arm_5 1308 1348 IPR000225 GO:0005515
Lapu3g03344 2147 SMART arm_5 307 356 IPR000225 GO:0005515
Lapu3g03344 2147 SMART arm_5 563 603 IPR000225 GO:0005515
Lapu3g03344 2147 SMART arm_5 1394 1434 IPR000225 GO:0005515
Lapu3g03344 2147 SMART arm_5 521 561 IPR000225 GO:0005515
Lapu3g03344 2147 SMART arm_5 90 131 IPR000225 GO:0005515
Lapu3g03344 2147 SMART arm_5 1726 1765 IPR000225 GO:0005515
Lapu3g03344 2147 SMART arm_5 1477 1517 IPR000225 GO:0005515
Lapu3g03344 2147 SMART arm_5 813 855 IPR000225 GO:0005515
Lapu3g03344 2147 SMART arm_5 1565 1603 IPR000225 GO:0005515
Lapu3g03344 2147 SMART arm_5 1853 1893 IPR000225 GO:0005515
Lapu3g03344 2147 SMART arm_5 729 767 IPR000225 GO:0005515
Lapu3g03344 2147 SMART arm_5 478 519 IPR000225 GO:0005515
Lapu3g03344 2147 SUPERFAMILY ARM repeat 573 1124 IPR016024 -
Lapu3g03344 2147 SMART C2_3c 2027 2123 IPR000008 -
Lapu3g03344 2147 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2026 2129 IPR035892 -
Lapu3g03344 2147 Pfam C2 domain 2026 2115 IPR000008 -
Lapu3g03344 2147 Gene3D - 1696 1817 IPR011989 -
Lapu3g03344 2147 Coils Coil 293 320 - -
Lapu3g03344 2147 Gene3D - 819 1177 IPR011989 -
Lapu3g03344 2147 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 25 2147 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Lapu3g03344 2147 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 2026 2147 - -
Lapu3g03344 2147 SUPERFAMILY ARM repeat 51 639 IPR016024 -
Lapu3g03344 2147 Gene3D - 1818 2024 IPR011989 -
Lapu3g03344 2147 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 532 574 IPR000225 GO:0005515
Lapu3g03344 2147 Pfam Armadillo/beta-catenin-like repeat 100 130 IPR000225 GO:0005515
Lapu3g03344 2147 Pfam Armadillo/beta-catenin-like repeat 521 560 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03344 Lapu-Chr3 56727767 56739151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03344 492 616 U-box Gene Family AT3G46510 32.540 2.54e-07 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03344 - - gmx:100794002 3828.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03344 3 56727767 56739151 Lapu3g03344 3 56727767 56739151 ECH
Lapu3g03344 3 56727767 56739151 Lapu6g00180 6 1492204 1503024 PCT