Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03328 ATGGCAACCGTTATAGATATGTACAACAAGAACAACATAGTGCCGGATTTCCTAGATCCGTACAGTGAAGAACTGATGAAAGCACTTGAGCCTTTTATGAAAAGTGATTATTTCTCTGCCCCTTCTAATTCCGCTTCTCCCTCAAGTCAATCACACCCTTATTCTCCCATTTCGTCGACTTCGTATCCTTCCCCCAACCAAATCAAGCTCAACCAACTCACCCCAGACCAAATCCTCCAGATTCAGGCCCAGGTCGGCATTCAGGCCCAACGACAAAATCAAGCCCACCTCGGCCCAAAACGAGTCCCTATGAAGCACGGTGGGGCTGCCGCGAAGCTGTACCGCGGGGTGCGGCAACGGCACTGGGGGAAGTGGGTCGCCGAGATCAGACTCCCGAAGAACCGCACGCGCCTCTGGCTGGGAACATTCGACACCGGAGAGGAAGCGGCGTTGGCGTACGACAACGCAGCGTTTAAGCTCAGAGGCGAGTTCGCGCGCCTCAATTTCCCTCATCTGCGACACCAGGGAGCGTTCGTATTCGGCGAATTCGGAGATTACAAACCGTTACCTTCTTCCGTGGACTCCAAACTCCAAGCTATTTGCGAAAGCTTGGCCAAACAAGAAGAACAAAAAACGTGTTGCTCTGTCGAAGACGTGAAGCCCGTGTTAGGCGCTTCTCCTCAGCGGGCACGGGTGGAATCTGACGTGGCGCAATCCAATGTTTGTCCCGAGTTCGAAAATTTTAAGGTAGAAAACGACAACGAGAACCCAATGTTGTCATCGCCTGTGTCTGGCGAATCTTCTTCGCCTGAATCGGGTGTTACTTTCGTGGATTTCTCGGATTTTTCATATTCTAATTATCAGTGGGATGATATGGAAAGTTTTGGGTTGGAAAAGTACCCTTCGGGTTATGTTTGGTTTGGGTGTCTTTGGCGGCTTCTGCAATGGAATTTTTGA 957 0.5057 MATVIDMYNKNNIVPDFLDPYSEELMKALEPFMKSDYFSAPSNSASPSSQSHPYSPISSTSYPSPNQIKLNQLTPDQILQIQAQVGIQAQRQNQAHLGPKRVPMKHGGAAAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTGEEAALAYDNAAFKLRGEFARLNFPHLRHQGAFVFGEFGDYKPLPSSVDSKLQAICESLAKQEEQKTCCSVEDVKPVLGASPQRARVESDVAQSNVCPEFENFKVENDNENPMLSSPVSGESSSPESGVTFVDFSDFSYSNYQWDDMESFGLEKYPSGYVWFGCLWRLLQWNF* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03328 318 ProSiteProfiles AP2/ERF domain profile. 113 170 IPR001471 GO:0003700|GO:0006355
Lapu3g03328 318 PRINTS Ethylene responsive element binding protein signature 136 152 IPR001471 GO:0003700|GO:0006355
Lapu3g03328 318 PRINTS Ethylene responsive element binding protein signature 114 125 IPR001471 GO:0003700|GO:0006355
Lapu3g03328 318 MobiDBLite consensus disorder prediction 252 272 - -
Lapu3g03328 318 FunFam Ethylene-responsive transcription factor 2 112 171 - -
Lapu3g03328 318 SUPERFAMILY DNA-binding domain 113 171 IPR016177 GO:0003677
Lapu3g03328 318 MobiDBLite consensus disorder prediction 40 66 - -
Lapu3g03328 318 Pfam AP2 domain 114 163 IPR001471 GO:0003700|GO:0006355
Lapu3g03328 318 Gene3D AP2/ERF domain 113 171 IPR036955 GO:0003700|GO:0006355
Lapu3g03328 318 CDD AP2 112 172 IPR001471 GO:0003700|GO:0006355
Lapu3g03328 318 SMART rav1_2 113 176 IPR001471 GO:0003700|GO:0006355
Lapu3g03328 318 MobiDBLite consensus disorder prediction 253 272 - -
Lapu3g03328 318 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 5 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03328 Lapu-Chr3 56576147 56577794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03328 4 313 AP2-EREBP Transcription Factor Family AT4G39780 47.604 1.40e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu3g03328 AP2 2.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03328 K09286 - gmx:100797648 446.047