Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03327 ATGACGCAGCAGAATGTGGTACTGTCCAAGACAAAGTCCGGGATCAACCGGGACCTAACGGTTGCGCAAAAGCCACCGGTGGCGCCGGGAGGCTACATTCCCATTCCGAGGAGGAGGGTTTTGAAGAACCTTGAGATCAATGGAGGACAAAGAATCAATGCATGGGTTGATTCCATGAGAGCCTCTTCTCCCACCCATGCCAAATCAACCTCTTCCTTCGCTGACGAACACAGCTCCTGGATTCTTCGCCACCCTTCGGCATTAGACATGTTTGAGCAAATTATGGATGCATCCAGGGGAAAGCAAATCGTCATGTTCCTGGACTACGATGGTACTTTGTCACCTATTGTTGATGATCCAGACCGTGCCTTCATGTCGGATTCGATGAGGAAAACGGTGAGGAAACTTGCGAGGTGTTTTCCCACTGCTATAGTTACAGGCAGATGCAGAGACAAGGTTTACAATTTTGTGCGCTTGGCTGAGCTATATTATGCTGGAAGCCATGGCATGGATATCCAAGGGCCAACAAGAGACTCCAAATACAGCAACAAAGACAAAGGAGAGCCACTTGTTTTTCAACCTGCCAGTGAATTTCTTCCCATGATAGATGAGGTGTACAATCAATTAGTTGAGAAAATGAAATCAATCCCCGGAGCTAGGGTGGAGAACAACAAGTTCTGCGCCTCTGTTCATTTTCGCTGCGTTGATGAAAAGAAATGGAGTGAACTGGCACAGGAAGTGAGATCAGTATTAAAAGAGTACCCGAAGCTTCGTCTTAACCAAGGAAGAAAGGTATTAGAGATTCGTCCATCCATTAAATGGGACAAAGGGAAGGCACTGGAATTTTTGTTAGAGTCACTTGGATTTGCCAACTGTAACGATGTCTTTCCTGTTTACATTGGAGATGATAAAACCGATGAAGATGCATTCAAGAAATTAAGAGACAGAGGACAAGGTTTTGGGATTCTTGTCTCGAAATTTCCAAAGGACACTACTGCATCATACTCTTTACAAGAACCTAACGAGGTGATGGATTTCCTTCAACGATTGGTGGAGTGGAAACAAGTATCCCTTCGACTCCGAGCACGTTCCCGTGTGTAA 1101 0.4559 MTQQNVVLSKTKSGINRDLTVAQKPPVAPGGYIPIPRRRVLKNLEINGGQRINAWVDSMRASSPTHAKSTSSFADEHSSWILRHPSALDMFEQIMDASRGKQIVMFLDYDGTLSPIVDDPDRAFMSDSMRKTVRKLARCFPTAIVTGRCRDKVYNFVRLAELYYAGSHGMDIQGPTRDSKYSNKDKGEPLVFQPASEFLPMIDEVYNQLVEKMKSIPGARVENNKFCASVHFRCVDEKKWSELAQEVRSVLKEYPKLRLNQGRKVLEIRPSIKWDKGKALEFLLESLGFANCNDVFPVYIGDDKTDEDAFKKLRDRGQGFGILVSKFPKDTTASYSLQEPNEVMDFLQRLVEWKQVSLRLRARSRV* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03327 366 FunFam Trehalose 6-phosphate phosphatase 201 360 - -
Lapu3g03327 366 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 34 359 IPR044651 GO:0004805|GO:0005992
Lapu3g03327 366 CDD HAD_TPP 104 344 - -
Lapu3g03327 366 FunFam Trehalose 6-phosphate phosphatase 103 190 - -
Lapu3g03327 366 NCBIfam HAD-IIB family hydrolase 105 316 IPR006379 -
Lapu3g03327 366 NCBIfam trehalose-phosphatase 101 351 IPR003337 GO:0003824|GO:0005992
Lapu3g03327 366 Gene3D - 103 189 IPR023214 -
Lapu3g03327 366 Gene3D - 202 362 IPR023214 -
Lapu3g03327 366 Pfam Trehalose-phosphatase 106 340 IPR003337 GO:0003824|GO:0005992
Lapu3g03327 366 SUPERFAMILY HAD-like 104 353 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03327 Lapu-Chr3 56538059 56541097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03327 94 357 Trehalose Biosynthesis Gene Families AT1G06410 24.735 2.95e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03327 K01087 - gmx:100788735 653.669