Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03305 ATGGATTCGCTTCAAAGCTTTGTCTCCCAATCCATTCAATCCCACACTCTCCTCACACACCACCAAATGAACATCGTATCCAACGAGATCCTAACCGCAATTCGCCACGTCATCACCAACGGCGCAGCCTTAGTTGCAGCCTCTGAAAGCGTGCTTCCCCTTTCGGAGACTCCAACGTCGTACTCTCCGAACCTAAACACCAACGAAACAAACGTGGTGGAGCTGGACGCGATGGAGCTCATGGCGCAGCACCTCCACGTCTGCGAGGTGTGCGGGAAAGGCTTCACGCGCGATGCCAACCTTAGGATGCACATGCGCGCTCACGGGGACGAGTTCAAGACTTCGGACGCGCTCGCGAGCAGGGCGCGTGGCGAGAGGCGCGTGAAGGAGACGCGGTTCTCGTGTCCCTTCGAAGGATGCAACCGCAACAAGACGCACAAGAAGTTCAGGCCCTTGAAGTCGGTGTTCTGTCTGAGGAACCACTTCAAGAGGAGCCACTGTCCCAAAACGCTGTCGTGCGACCGGTGTCGGAAGAAGAGCTTCGCGGTGCTCTCGGACTTGAGGAGTCACGTGAAGCAGTGTCGGGGAGAGGCCACGTGGAAGTGCTCGTGCGGAACCACGTTTTCGCGGAAGGACAAGCTGTTCGGACACGTGGCGCTGTTCGAGGGGCATTTGCCGATGCTTGAAGAGGAGAAGGAGACCTCGGTGGCGGCGGCTGTGGCGGCGGAATGGTCGGTGAAGGAAAATGACGGTGGTTTGGATGGGTTACCTGAAGGGTTCTTTGATGGGTTGGATGAATTTGGGTTTGGTTCCACTGAAAGCAACTCTTCACTGGACCAAACTTGGCCTTGGGGCTTCCCACAACTAATTTAA 873 0.5647 MDSLQSFVSQSIQSHTLLTHHQMNIVSNEILTAIRHVITNGAALVAASESVLPLSETPTSYSPNLNTNETNVVELDAMELMAQHLHVCEVCGKGFTRDANLRMHMRAHGDEFKTSDALASRARGERRVKETRFSCPFEGCNRNKTHKKFRPLKSVFCLRNHFKRSHCPKTLSCDRCRKKSFAVLSDLRSHVKQCRGEATWKCSCGTTFSRKDKLFGHVALFEGHLPMLEEEKETSVAAAVAAEWSVKENDGGLDGLPEGFFDGLDEFGFGSTESNSSLDQTWPWGFPQLI* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03305 290 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
Lapu3g03305 290 Pfam Zinc-finger of C2H2 type 87 106 - -
Lapu3g03305 290 Gene3D Classic Zinc Finger 85 108 - -
Lapu3g03305 290 SMART c2h2final6 133 166 IPR013087 -
Lapu3g03305 290 SMART c2h2final6 86 108 IPR013087 -
Lapu3g03305 290 SMART c2h2final6 171 192 IPR013087 -
Lapu3g03305 290 FunFam B-cell CLL/lymphoma 6, member B 85 108 - -
Lapu3g03305 290 SUPERFAMILY beta-beta-alpha zinc fingers 84 110 IPR036236 -
Lapu3g03305 290 Gene3D Classic Zinc Finger 124 222 - -
Lapu3g03305 290 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 63 238 IPR044300 GO:0010044|GO:0010447
Lapu3g03305 290 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 113 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03305 Lapu-Chr3 56346920 56347920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03305 64 283 C2H2 Transcription Factor Family AT1G34370 48.214 1.04e-69 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu3g03305 zf-met 0.0021 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03305 - - vum:124823301 496.893