Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03304 ATGCCAGTTGAAATGGACTTCTTATTTGTGTTAGTGCTATTGGGTTGCTTATGTTCTTTTGTGTTTCCTGATACGCAAGGAGATGCACTATATGCATTGAAATTGTCATTGAATGCTTCAGCTCACCAGCTTACTGACTGGAATCAAAATCAAGTGAATCCTTGTACTTGGTCACGTGTTTACTGTGACTCAAACAACAATGTCATGCAAGTATCACTAGCATATATGGGATTCACTGGATACCTGACCCCAAGAATAGGAGTTCTAAAATATGTTACAGCTCTTTCTTTACAAGGGAATGACATCACTGGCAATATACCAAAAGAGATCGGAAACATGACAAGCTTGTGCAGGTTGGATTTGGAAAGCAATAAATTAACTGGAGAAATACCTTCTTCCCTTGGTAATCTTAAAAAGCTTCAGTTCTTAACATTGAGTCAAAACAATCTTAGTGGGACTATTCCTGAATCACTTGCCACTCTTCCAATCTTGATCAACGTTATGCTAGATTCAAATAATCTGAATGGAAAAATCCCAGAGAGGTTATTTGAGGTTTCTAAATACAATTTCACTGGAAATAATTTGGATTGTGGTGTGAATTATCATCGACTCTGTGAATCTGATAATGCAGATCAAGGTTCATCACATAAACCAAAAACTGGCCTCATAGTTGGAATTGTTATAGGGTTAGTTGTTATCCTTTTCCTTGGTGGTCTGCTGTTCTTTTGGTGCAAGGGTAGACACAAGGGCTACAGGCGTGAAGTTTTTGTAGATGTTGCAGGGGAAGTTGATCGACGAATTGCATTTGGTCAGCTAAAACGATTTGCATGGAGAGAACTACAGATAGCTACAGACAACTTCAGTGAGAAGAATGTTTTAGGACAGGGAGGCTTTGGAAAGGTTTATAAAGGTGTTCTTGCTGATAACACGAAAGTTGCTGTCAAAAGGTTAACTGATTATGAAAGTCCTGGGGGAGATGCAGCTTTCCAGCGTGAGGTTGAGATGATAAGTGTAGCTGTGCATAGGAACCTGTTACGGCTTATTGGGTTTTGTACTACCCCGACCGAGCGCCTCTTAGTTTATCCCTTTATGCAGAACTTAAGTGTTGCCTATCGTCTTCGAGAACTCAAACCTGGTGAACCTGTTCTGGACTGGCCTACTAGAAAAAGAGTGGCCCTGGGAACGGCTCGAGGCTTAGAATATCTTCACGAGCATTGCAATCCTAAGATTATTCATCGGGATGTGAAGGCAGCCAATGTATTACTGGATGAAGATTTTGAAGCTGTTGTTGGTGATTTTGGCTTGGCAAAGTTAGTTGATGTTCGAAAAACCAACGTGACAACTCAAGTTCGTGGGACAATGGGCCACATAGCTCCAGAATATTTGTCCACTGGAAAGTCTTCGGAAAGGACTGATGTTTTTGGTTATGGGATTATGCTTTTGGAGCTTGTTACAGGTCAAAGAGCAATTGACTTTTCACGATTAGAAGAGGAAGATGACGTGCTGTTACTTGACCATGTTAAGAAATTAGAACGGGAGAAAAGACTAGATGCCATTGTTGATCGCAACCTAAATAAAAATTATAACATACAAGAGGTAGAAATGATGATGCAAGTTGCATTGCTCTGTACGCAAGCAACACCAGAGGACCGTCCACCAATGTCTGAGGTCGTAAGAATGCTAGAAGGAGAAGGGTTGGCTGAAAGGTGGGAGGAATGGCAGCATGTGGAGGTCAATCGGAGGCAAGAATACGAGAGATTACAAAGAAGATTTGATTGGGGAGAAGATTCGGTCTATAATCAAGATGCCATTGAGTTGTCAGGTGGAAGATGA 1833 0.4108 MPVEMDFLFVLVLLGCLCSFVFPDTQGDALYALKLSLNASAHQLTDWNQNQVNPCTWSRVYCDSNNNVMQVSLAYMGFTGYLTPRIGVLKYVTALSLQGNDITGNIPKEIGNMTSLCRLDLESNKLTGEIPSSLGNLKKLQFLTLSQNNLSGTIPESLATLPILINVMLDSNNLNGKIPERLFEVSKYNFTGNNLDCGVNYHRLCESDNADQGSSHKPKTGLIVGIVIGLVVILFLGGLLFFWCKGRHKGYRREVFVDVAGEVDRRIAFGQLKRFAWRELQIATDNFSEKNVLGQGGFGKVYKGVLADNTKVAVKRLTDYESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTPTERLLVYPFMQNLSVAYRLRELKPGEPVLDWPTRKRVALGTARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRLEEEDDVLLLDHVKKLEREKRLDAIVDRNLNKNYNIQEVEMMMQVALLCTQATPEDRPPMSEVVRMLEGEGLAERWEEWQHVEVNRRQEYERLQRRFDWGEDSVYNQDAIELSGGR* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03304 610 Pfam Leucine rich repeat N-terminal domain 23 63 IPR013210 -
Lapu3g03304 610 SUPERFAMILY L domain-like 26 195 - -
Lapu3g03304 610 ProSitePatterns Serine/Threonine protein kinases active-site signature. 410 422 IPR008271 GO:0004672|GO:0006468
Lapu3g03304 610 Gene3D Ribonuclease Inhibitor 23 207 IPR032675 -
Lapu3g03304 610 Gene3D Transferase(Phosphotransferase) domain 1 364 581 - -
Lapu3g03304 610 Gene3D Phosphorylase Kinase; domain 1 256 363 - -
Lapu3g03304 610 SUPERFAMILY Protein kinase-like (PK-like) 267 562 IPR011009 -
Lapu3g03304 610 Pfam Protein kinase domain 288 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g03304 610 FunFam Somatic embryogenesis receptor-like kinase 1 364 581 - -
Lapu3g03304 610 SMART serkin_6 287 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g03304 610 ProSiteProfiles Protein kinase domain profile. 287 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g03304 610 FunFam Putative LRR receptor-like serine/threonine-protein kinase 23 207 - -
Lapu3g03304 610 FunFam Somatic embryogenesis receptor kinase 1 256 363 - -
Lapu3g03304 610 CDD TM_EGFR-like 218 252 - -
Lapu3g03304 610 Pfam Leucine rich repeat 92 150 IPR001611 GO:0005515
Lapu3g03304 610 ProSitePatterns Protein kinases ATP-binding region signature. 293 315 IPR017441 GO:0005524
Lapu3g03304 610 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 8 572 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03304 Lapu-Chr3 56330072 56337816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03304 4 610 Receptor kinase-like Gene Family AT5G10290 78.089 0.0 947
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Lapu3g03304 Pkinase 1.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03304 - - gmx:100793416 1128.62