Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03297 ATGGAGGAGGAAGAGCACGAGGTGTACGGAGGAGAGATCCCCGACGTGGGTGAGATGGAAGGGGACGTCGACATGTCCGCCGCCGACGATGACGCGGCCGTCAAGGAGCTCGACGAGATGAAGCGCCGATTGAAGGAGATGGAAGAGGAAGCCGCAGCGCTTCGCGAGATGCAAGCCAAGGTCGAGAAGGAAATTGGCAGCGTTCAAGATCCTGCTAATGCAGCTGCTTCTCAGGCAAACAAGGAGGAGGCAGATTCTCGGTCTGTTTTTGTTGGCAATGTTGATTATGCATGCACACCAGAAGAAGTGCAGCAACACTTTCAATCCTGTGGTACTGTGAACAGGGTCACTATCCTGACAGACAAGTTTGGCCAGCCTAAAGGTTTTGCTTATGTGGAATTTGTTGAAGTTGAAGCTGTTCAAGAGGCTCTCCTCTTGAATGAATCTGAACTGCATGGCCGGCAACTGAAGGTTTTGCCTAAGAGGACCAATGTCCCTGGAATGAAACAACATCGTCCTAGACGGTTTAATCCTTACATGGCATATGGCTTCAGGAGGCCATATACTCCTCCTTACTTTTATTCCCCTTATGGATATGGGAAGGCTCCTAGGTTTAGAAGGCCAAATCGTTACATGCCGTACTACTAG 648 0.5015 MEEEEHEVYGGEIPDVGEMEGDVDMSAADDDAAVKELDEMKRRLKEMEEEAAALREMQAKVEKEIGSVQDPANAAASQANKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQEALLLNESELHGRQLKVLPKRTNVPGMKQHRPRRFNPYMAYGFRRPYTPPYFYSPYGYGKAPRFRRPNRYMPYY* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03297 215 Gene3D - 16 172 IPR012677 -
Lapu3g03297 215 FunFam Polyadenylate-binding protein 1 25 159 - -
Lapu3g03297 215 CDD RRM_II_PABPs 88 159 - -
Lapu3g03297 215 Coils Coil 30 64 - -
Lapu3g03297 215 MobiDBLite consensus disorder prediction 1 22 - -
Lapu3g03297 215 SUPERFAMILY RNA-binding domain, RBD 77 183 IPR035979 GO:0003676
Lapu3g03297 215 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 157 IPR000504 GO:0003723
Lapu3g03297 215 SMART rrm1_1 88 159 IPR000504 GO:0003723
Lapu3g03297 215 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 14 175 - -
Lapu3g03297 215 MobiDBLite consensus disorder prediction 64 83 - -
Lapu3g03297 215 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 163 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03297 Lapu-Chr3 56283581 56289279 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03297 84 158 Eukaryotic Initiation Factors Gene Family AT2G36660 34.211 4.74e-09 53.9