Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03286 ATGGATTCTCAACCTAAAGACCGACATCCTGGCCGTCATACCAGAACAGCTTCTCCTCTCAAATCCCCTATTTCAGGTTTCGTTGATTCGCCTCTCAAGATTGGAGAACATCATAGACATCTTGTTCAAGTATCGTTGACTGTGACGGCATGCATAGCTGGCGTCATCATGTTTCTCTTCACCGTGTCCGTACTCATAAGGTACTTCTACTCCAGGAGATATAACCGCAATCCGAACGGAAGAAGAGACATGCCCATATTGTTCGATTTGAACGGAGATTCTCCACCTTCGGATAACGATGATGACGTGGAGCAAGGCGACTTGGCGGCTGTCCACCACGTATGGTACATCCGCACCGTCGGTCTCCAACAATCGCTTATAGACTCCATCACCGTCTTTAAATACAGAAAAAACGAAGGAATCATAGACAGCTCCGAATGTTCCGTGTGCCTTGGAGAGTTCGAACACGACGACACTCTTAGGTTGTTGCCCAAGTGCAGCCACGCGTTCCACGTGCCTTGCATTGACACGTGGCTCCGGTCGCACAAAAACTGCCCCCTGTGTCGCGCGCCTGTGGTCCGCGATGAAACTGGACCCGTCCATCAGAATGGTCAAATGGATTCAAGCGTGTCCGACCATCAGATTCAAAATCATGAGGTTCAGGTGGAGGATTCTGATGATGGGGTTGGATTAGAAGATGGTGGTGGTTCTGGTGAGTCCTCTGGTGGAATAGAAACGCAGCCTCTGAGGAGATCGGTTTCGATGGATTTTTCTTCTGCTTCACATTCAATGGTGTTTCGTGATGTGGGGGTGGATATTGACACCCCTTATGGCGAAAAGGTTAGTTCGAGTAACAAGGGTATGATTCATATGAACATTATCGAGAAACATGGAAGTGGGAGTTCAAGTTCAACTACCATTCACAAGTTGGCTTCAATTGGACGTGCGTTGCAAAAGGGACCAGTCTCAATGAGAAGATCGTTTTCACATAACAGGAAATTTTTGTTCTCCACTCACTGTAGGAGTCAGAGTTCTACTCTTCCATTGTAA 1050 0.4752 MDSQPKDRHPGRHTRTASPLKSPISGFVDSPLKIGEHHRHLVQVSLTVTACIAGVIMFLFTVSVLIRYFYSRRYNRNPNGRRDMPILFDLNGDSPPSDNDDDVEQGDLAAVHHVWYIRTVGLQQSLIDSITVFKYRKNEGIIDSSECSVCLGEFEHDDTLRLLPKCSHAFHVPCIDTWLRSHKNCPLCRAPVVRDETGPVHQNGQMDSSVSDHQIQNHEVQVEDSDDGVGLEDGGGSGESSGGIETQPLRRSVSMDFSSASHSMVFRDVGVDIDTPYGEKVSSSNKGMIHMNIIEKHGSGSSSSTTIHKLASIGRALQKGPVSMRRSFSHNRKFLFSTHCRSQSSTLPL* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03286 349 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 46 197 IPR044675 -
Lapu3g03286 349 FunFam RING-H2 finger protein ATL54 122 195 - -
Lapu3g03286 349 SUPERFAMILY RING/U-box 131 195 - -
Lapu3g03286 349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 197 IPR013083 -
Lapu3g03286 349 ProSiteProfiles Zinc finger RING-type profile. 147 189 IPR001841 -
Lapu3g03286 349 MobiDBLite consensus disorder prediction 222 249 - -
Lapu3g03286 349 Pfam Ring finger domain 146 189 IPR001841 -
Lapu3g03286 349 CDD RING-H2_EL5-like 146 189 - -
Lapu3g03286 349 SMART ring_2 147 188 IPR001841 -
Lapu3g03286 349 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03286 Lapu-Chr3 56102449 56103793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03286 112 237 C3H Transcription Factor Family AT5G10380 57.937 2.38e-41 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03286 - - gmx:102663026 367.466