Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03285 ATGCTCTCTTCACCTTCTATTCAAATCTCCGTCCATCAAACAACATCAACAACAACATGTAAAAGTACATCCACATGCTCCACTCTTTTTCTCAACTCTCTCCTTCTCTTCCACTCCAATTATTTCAATGCCCTCATGGGAAAAACCAAAATTTTCAATCTTTTTGCCAATGGCACCAGCAGTTACATGCTTCCTAATTCCAATACTATTAGGGAAACTCTTGTAAACCGGCCAAATTCCCACAAAGATCGCTTTCCCTTTTCACTCTTTGAATTCTTGCGCCGCTTCATTCCTTCAAGAAAAGTTGATGGGGGCTCAAAAACTGAGGACGAGGAGAAAGTCTGCTCGTGGTTATATACCCTTGCTCAGTCTGACAAGTACTTGGTCTTTGAGTACGTTAGGTCCACTGAAAGAGGTTTAAGTTTCACAGAAGCAGAGAGGAGACTTCGGGAAAATGGGCCAAATGTTCCACTTGAGCATTCCTTTCCAAAATGGTGGCATCTTCTACGGAACGCTCTTTTCCACCCTTTTAATATCATTCTGATTGTTTTGTCAGTTATGTCATTCATTGCCCGTGACAGTCCAAATGGATTTATCATGCTCGTCTTGGTTTTCATCAGTGTCACCCTCCGTTTCTATCAGGAATACAGCAGCTCAAAAGCAGCAATGAAGCTTTCAGAATTTGTAAAATGTCCAATAAAAGTTCAAAGATGCGCTGGTAGAGTTGTTCAGAAAGAGCTTGTTGTTCAAGTTGATCATAGGGATGTAGTTCCAGGTGACATTTTGATTTTTGAACCTGGTGACCTCTTTCCTGGAGATATCAGATTGTTATCTTCTAAACAACTTGTTGTAAGCCAGGCCTCACTAACTGGGGAATCTTGGACAACTGACAAAACTGCTGATATCAGAGAAGACTACACTACTCCTTTATTGGATTTAAAAAACATCTGTTTTATGGGCACAAACGTGGTATCAGGTACTGGAACAGGCCTAGTGATTTCAACTGGATCCAATACTTACTTGAGCACCATGTTTTCAAAAGTTGGGAAGAAGAAGCCACCAGATGAATTTGAAAAGGGTCTCAGATGGATATTTTACTTTCTTATTTCTGTTATGCTAGTGGTTGTTACCATCATGTTTGTGGTAAATTACACTACTTCTCTTAATTTGACCCAAAGCGTTCTTTTTGCCATCTCTGTTGCATCTGTCCTGAATCCTCAAATGCTTCCCCTCATCGTTAATACATGCCTTGCAAAAGGAGCACTGGCCATGGCTAAAGACAGGTGCATAGTAAAGAGTTTAACATCTATACGCGAAATGGGATCAATGGATATTCTTTGTATTGACAAGACAGGTTCCCTTACAATGAATCATGCAATAATGGTTAATCATCTTGACAACAGGGGTTTACCCCAAGAAAAAGTTTTACGCTATGCCTTCCTCAACTCTTACTTTAAGACTGATCAGAAGTATCCTCTGGATGATGCTATTCTGGCATTTGTATATTCAAATGGATTCAAGTTTCAGCCATCTAAGTGGAAGAAGATAGATGAAATTCCTTTTGACTTCATAAGAAGAAGAGTATCTGTCATCTTAGAAACAGAAGAGAGACACTCACAATTCTTTGGCAGGTTCATGGTAACAAAAGGAGCACTACTAGAAGTATTGAAAGTTTGTTCTTTCATTGAGAATTTCGATAAAGATGAAATTTCCCCCTTCTCTTCAGATGATTATCAGCGTATTTTAAATCTTTCAGAAGATATTAGCAATGAAGGATTAAGGATTATAGGAGTAGCTATAAGGAAGCTGGAAATGCCACAAACATGTGAAACAAGTAATGGAAACAAGAGAGAAGACGAGGATATCGAAAAAGACATGGTGTTCCTTGGCCTTATAACGTTTTTCGACCCACCTAAGGACACAGCAAACCAAGCACTGTGGCGTTTGTGTGAGAAGGGAGTGAAAGCAAAGGTTTTAACTGGTGATTCCCTCTCCTTGACAACAAGGGTATGCAGGGAAGTTGGCATAAGCACCACTCATGTAATCACTGGTCCTGAACTAGAGTTACTTGACCAAGACACTTTCCATGAGACAGTTAAAAGAGCCACGGTACTAGCACGTCTCACTCCAATTCAGAAACTCCAGGTAGTGCAATCCTTGCAAACAGTTGGAAACCATATTGTTGGCTTCTTAGGAGATGGAGTGAATGATTCACTGGCTTTAGATGCTGCGAATGTAAGCATTTCTGTGGATTCAGGAGTAGCCATTGCAAAAGACATGGCAGATATTATCTTACTTGAGAAAGACCTGAACGTGCTTGTTGCGGGAGTGGAGCATGGTAGACTCACTTTTGGCAACACAATGAAGTATGTTAAGATGTCAGTGATTGCTAACTTGGGAAGTGTCATTTCACTCCTCATGGCAACACTGCTATTCAAGTATGAGCCCTTAACTTCTAGACAGCTTCTTACCCAAAATTTCATCTACAGTGTGGGACAGATTGCCATCGCCTGGGACAAGATGGATGAAGAGTATATTAAGACACCTCACAAGTCCTCGGAAAGAGGCTTGTCCATGTTCATATTGTGGAATGGATCAGTGTGCACTCTGTGTGATGTGGCAACACTCATGATTCTTTGGTTTTATTACGAAGCTTACACTGATGTGACACAGAAGTTTTTCCATTCAGCTTGGTTCATTGAAGGTCTCCTCTTGCAGACCCTCATCATTCACTTGATCAGGACAGAGAAAATCCCTTTCATACAGGAGGTTGCATCTTGGCCTGTGATTTCCTCCACTGTAGTGACTTCTGCAATTGGAATTGCACTTCCATTCACACCCATTGGGAAGGTCATGGGATTCTCCTATCTGCCTCTCTCGTATTTCGGACTTCTGCTACTTCTTTTTCTTGGCTATTTCATAGTTGGCCAGGTGGTCAAGAGACTTTACATATTGGTTTATAAGAGATGGCTTTGA 2976 0.4083 MLSSPSIQISVHQTTSTTTCKSTSTCSTLFLNSLLLFHSNYFNALMGKTKIFNLFANGTSSYMLPNSNTIRETLVNRPNSHKDRFPFSLFEFLRRFIPSRKVDGGSKTEDEEKVCSWLYTLAQSDKYLVFEYVRSTERGLSFTEAERRLRENGPNVPLEHSFPKWWHLLRNALFHPFNIILIVLSVMSFIARDSPNGFIMLVLVFISVTLRFYQEYSSSKAAMKLSEFVKCPIKVQRCAGRVVQKELVVQVDHRDVVPGDILIFEPGDLFPGDIRLLSSKQLVVSQASLTGESWTTDKTADIREDYTTPLLDLKNICFMGTNVVSGTGTGLVISTGSNTYLSTMFSKVGKKKPPDEFEKGLRWIFYFLISVMLVVVTIMFVVNYTTSLNLTQSVLFAISVASVLNPQMLPLIVNTCLAKGALAMAKDRCIVKSLTSIREMGSMDILCIDKTGSLTMNHAIMVNHLDNRGLPQEKVLRYAFLNSYFKTDQKYPLDDAILAFVYSNGFKFQPSKWKKIDEIPFDFIRRRVSVILETEERHSQFFGRFMVTKGALLEVLKVCSFIENFDKDEISPFSSDDYQRILNLSEDISNEGLRIIGVAIRKLEMPQTCETSNGNKREDEDIEKDMVFLGLITFFDPPKDTANQALWRLCEKGVKAKVLTGDSLSLTTRVCREVGISTTHVITGPELELLDQDTFHETVKRATVLARLTPIQKLQVVQSLQTVGNHIVGFLGDGVNDSLALDAANVSISVDSGVAIAKDMADIILLEKDLNVLVAGVEHGRLTFGNTMKYVKMSVIANLGSVISLLMATLLFKYEPLTSRQLLTQNFIYSVGQIAIAWDKMDEEYIKTPHKSSERGLSMFILWNGSVCTLCDVATLMILWFYYEAYTDVTQKFFHSAWFIEGLLLQTLIIHLIRTEKIPFIQEVASWPVISSTVVTSAIGIALPFTPIGKVMGFSYLPLSYFGLLLLLFLGYFIVGQVVKRLYILVYKRWL* 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03285 991 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 440 638 IPR023299 GO:0000166
Lapu3g03285 991 PRINTS Magnesium-transporting ATPase signature 360 376 IPR006415 GO:0015444|GO:0015693|GO:0016020
Lapu3g03285 991 PRINTS Magnesium-transporting ATPase signature 859 875 IPR006415 GO:0015444|GO:0015693|GO:0016020
Lapu3g03285 991 PRINTS Magnesium-transporting ATPase signature 789 804 IPR006415 GO:0015444|GO:0015693|GO:0016020
Lapu3g03285 991 PRINTS Magnesium-transporting ATPase signature 481 494 IPR006415 GO:0015444|GO:0015693|GO:0016020
Lapu3g03285 991 PRINTS Magnesium-transporting ATPase signature 839 852 IPR006415 GO:0015444|GO:0015693|GO:0016020
Lapu3g03285 991 PRINTS Magnesium-transporting ATPase signature 944 965 IPR006415 GO:0015444|GO:0015693|GO:0016020
Lapu3g03285 991 PRINTS Magnesium-transporting ATPase signature 894 915 IPR006415 GO:0015444|GO:0015693|GO:0016020
Lapu3g03285 991 PRINTS Magnesium-transporting ATPase signature 377 396 IPR006415 GO:0015444|GO:0015693|GO:0016020
Lapu3g03285 991 Pfam haloacid dehalogenase-like hydrolase 443 745 - -
Lapu3g03285 991 Gene3D - 231 335 - -
Lapu3g03285 991 SMART Cation_ATPase_N_a_2 120 193 IPR004014 -
Lapu3g03285 991 PANTHER CATION TRANSPORTING ATPASE 134 981 - -
Lapu3g03285 991 Pfam Cation transporter/ATPase, N-terminus 133 188 IPR004014 -
Lapu3g03285 991 SUPERFAMILY Calcium ATPase, transduction domain A 241 346 IPR008250 -
Lapu3g03285 991 SUPERFAMILY HAD-like 622 779 IPR036412 -
Lapu3g03285 991 NCBIfam HAD-IC family P-type ATPase 697 810 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lapu3g03285 991 NCBIfam HAD-IC family P-type ATPase 200 492 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lapu3g03285 991 Gene3D - 444 768 IPR023214 -
Lapu3g03285 991 SUPERFAMILY Calcium ATPase, transmembrane domain M 135 988 IPR023298 -
Lapu3g03285 991 Gene3D - 196 941 - -
Lapu3g03285 991 Gene3D - 459 635 IPR023299 GO:0000166
Lapu3g03285 991 Pfam E1-E2 ATPase 241 426 - -
Lapu3g03285 991 NCBIfam magnesium-translocating P-type ATPase 112 990 IPR006415 GO:0015444|GO:0015693|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03285 Lapu-Chr3 56087667 56093750 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03285 138 883 Primary Pumps ATPases(2) AT1G10130 26.000 5.44e-65 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03285 K01531 - pvu:PHAVU_002G260400g 1755.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03285 3 56087667 56093750 Lapu3g03285 3 56087667 56093750 ECH