Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03271 ATGTTGGGAGAAGAGAGTAACAACGCCGACCCCGGTGTTCACCGGAAAGCACATTCCAGATCAGTTTCTTGGACCGACCGGTCTCCTGTGACTCGGAAACCGCCGCGATCCCTTCAGCCTCTTGCCATCAGGAAACACAACGTGAAGGAGTGGCCGAGCGCCAGCGGCGACGATCTAGAGGATTGTCTTCCGCCACCGACCCCGAGAGGGTCCACCAAAGGATCGTCAAATTCGGGTCAGGTTTTTCAGCTTAGGAGAGACAAGTTGGCTTTCTACGACAAGGAGTGTTCGAAAATCGCAGAGCATGTGTACTTGGGTAGTGACACGGTGGCAAAGAGCGAGGAGGTTTTGCGGCGGCACGGGATAACGCACGTGTTGAATTGTGTGGGGTTCGTTTGCCCCGAGTATTTCAGAACCGACTTCGTCTACAAAACGCTATGGCTGCGGGACAGTCCCTCGGAGGACATCACCAGCATTCTCTACGACGTTTTCGATTACTTCGAGGATGTGCGACAACAGGGTGGGCGCGTGTTCGTGCACTGCTGCCAGGGCGTGTCGCGCTCGACATCGTTGGTCATCGCGTATCTCATGTGGAGGGAGAGCCAGAGCTTTGAGGACGCGTTTCACTTCGTGAAGAACGCGCGTGGCATCACGAATCCGAACATGGGTTTCGCGTGTCAGCTATTGCAGTGTCAGAAGCGCGTGCATGCTACGCCACCGAGTCCTACTTCTGTTCTCAGGATGTATAGGATGGCGCCTCATTCTCCCTACGACCCTCTTCACCTTGTTCCTAAGATGGTTGACAACCCTTGCGCCCACGCGCTTGATTCGCGTGGGGCATTTATTGTGCATGTTCCTTCTACTTTATACGTGTGGGTTGGGAAGGAGTGTGGCTCGGTGATGTGTGGCAAGGCGCGTTATGCAGCTACTCAGGTTGTTCGATATGAGAGGGCCACTGGGGAGATTCTTAGTGTGGCTGAGGATGAAGAGCCTGAAGAGTTTTGGGTTGCTCTTTCTAACAAGGAAGTGTTGGTGGAGGATGAAAAGGTGAGGAGAGTTGAGGAGTATGATTTGGATTTTGCAATTTTTCATAAGGCACTTGCTGGTGGGGTTGTTCCACCTTTTTCTTTGTCTCATGCTGGATCAGAAAATTGCCTCCCTTCTAAGGAAAATGAGTGGGGGAGATTGACTAGGAAGCTTACT 1203 0.527 MLGEESNNADPGVHRKAHSRSVSWTDRSPVTRKPPRSLQPLAIRKHNVKEWPSASGDDLEDCLPPPTPRGSTKGSSNSGQVFQLRRDKLAFYDKECSKIAEHVYLGSDTVAKSEEVLRRHGITHVLNCVGFVCPEYFRTDFVYKTLWLRDSPSEDITSILYDVFDYFEDVRQQGGRVFVHCCQGVSRSTSLVIAYLMWRESQSFEDAFHFVKNARGITNPNMGFACQLLQCQKRVHATPPSPTSVLRMYRMAPHSPYDPLHLVPKMVDNPCAHALDSRGAFIVHVPSTLYVWVGKECGSVMCGKARYAATQVVRYERATGEILSVAEDEEPEEFWVALSNKEVLVEDEKVRRVEEYDLDFAIFHKALAGGVVPPFSLSHAGSENCLPSKENEWGRLTRKLT 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03271 401 Gene3D Severin 247 344 IPR029006 -
Lapu3g03271 401 MobiDBLite consensus disorder prediction 1 79 - -
Lapu3g03271 401 SUPERFAMILY Actin depolymerizing proteins 240 345 - -
Lapu3g03271 401 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 154 215 IPR000387 GO:0016311|GO:0016791
Lapu3g03271 401 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 85 237 IPR029021 -
Lapu3g03271 401 ProSiteProfiles Dual specificity protein phosphatase domain profile. 95 237 IPR020422 GO:0006470|GO:0008138
Lapu3g03271 401 CDD DSP 96 230 - -
Lapu3g03271 401 SMART dsp_5 95 234 IPR020422 GO:0006470|GO:0008138
Lapu3g03271 401 ProSitePatterns Tyrosine specific protein phosphatases active site. 179 189 IPR016130 GO:0016311|GO:0016791
Lapu3g03271 401 Gene3D Protein tyrosine phosphatase superfamily 72 237 IPR029021 -
Lapu3g03271 401 PANTHER MKPA PROTEIN 23 400 - -
Lapu3g03271 401 SMART VILL_6 250 341 IPR007122 GO:0051015
Lapu3g03271 401 Pfam Dual specificity phosphatase, catalytic domain 103 233 IPR000340 GO:0008138|GO:0016311
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03271 Lapu-Chr3 55970363 55971565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03271 94 238 Protein tyrosine phosphatase (PTP) family AT3G06110 34.483 4.37e-24 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03271 - - pvu:PHAVU_002G259000g 721.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03271 3 55970363 55971565 Lapu3g03271 3 55970363 55971565 ECH