Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03250 ATGTTAGAGACTGCTGGTGCTGAACGTCATTCCGAGGCCAGTTCCGAGACTCTCAATTCTTCCATGCTCGGAAGCTCCATGAGCAGCGAGAGTATTTGTAGCACCAGTTTCAGCCGTCTCTCCTTCGATCTCCTCCCGCCCTCGCCGGAGAGTCTCTCCCTCAAGCCTCACCGCTCCTCCGACTTTGCCTACTCCGCCATCCGCTCCGCAACCTTTCGCCGCAAGGCCTCCCTCACCTTCCGGGATTTTCACCTCCTCCGTCGCATCGGCGCCGGAGACATCGGCACCGTCTACCTCTGCCGCCTCCGCAGCCGGCAATTCAACAGCCCCGAAGATGACGACGAAGATGAGGCGTGCTGTTTGTACGCGATGAAGGTGGTTGACAAAGACGCAGTGGCATTGAAGAAGAAGTCGCAGAGAGCGGAAATGGAGAGAAAAATTCTGAAGATGCTGGATCACCCGTTCCTCCCCACGCTTTACGCGGAGTTCGAAGCCTCTCATTTCTCTTGCATCGTCATGGAGTTTTGCTCCGGTGGAGACCTTCACACTCTGCGTTTCAAGCACCCTCAGAACTGTTTCCCTCTCTCTTCCGCCAGATTTTATGCCGCGGAGGTGTTGGTGGCGTTGGAGTACCTTCACATGTTGGGAATCATATACAGAGATTTGAAGCCCGAAAACGTCTTGGTCAGATCAGACGGTCACATCATGCTTTCTGATTTCGATCTCTCTCTTTGTTCAGATGCAATCCCAGCCGTTGAATCTTCAGATTCGTTACACAATCCATCTCCAAATGCATTACCTTACACTTACACCCACAATCACACTCCCACTCGCTCACATTCTTTTATCAGTCCATTCTCCTGCTTCTCGAACCGGGCTTTCCGGTCTCGTGACATCCGAGCTGTCGAACCGAACCGCCTCTTCGTCGCTGAACCTGTTTCGGCCCGCTCTTGTTCCTTCGTCGGAACCCACGAGTACGTGTCGCCGGAGGTGGCCGCCGGTAGGTCGCACGGCAACGCCGTGGACTGGTGGTCGTTTGGAGTATTTATCTACGAGCTGATATACGGTCGCACGCCGTATGCGGGTCCATCGAAGGAGGCTACGCTGCGGAACATCGTGAAGAAACCCCTGGCGTTCCCCACGGCCACGCCCGCGAGCGGTCTTGAACTCCACGCGCGGGACTTGATATCCGGCTTGCTGAACAAAGACCCGGCGCGTCGGCTCGGGTCAAAGCGCGGCGCCGCTGACGTCAAGAAGCACCCGTTCTTCAAAGGGCTTAACTTGGCGCTGATTCGCATGCAGACGCCGCCCCAAGTGCCTGGCTCGAGAAGGACCAAAACGACGTCGCTGTACCCTGTGAAGGGTAACAGTAGCAACAACCACCTGCATAAACAGCAACAGACGGCGTCGTTTGATTTTTTCTTTTGA 1428 0.5546 MLETAGAERHSEASSETLNSSMLGSSMSSESICSTSFSRLSFDLLPPSPESLSLKPHRSSDFAYSAIRSATFRRKASLTFRDFHLLRRIGAGDIGTVYLCRLRSRQFNSPEDDDEDEACCLYAMKVVDKDAVALKKKSQRAEMERKILKMLDHPFLPTLYAEFEASHFSCIVMEFCSGGDLHTLRFKHPQNCFPLSSARFYAAEVLVALEYLHMLGIIYRDLKPENVLVRSDGHIMLSDFDLSLCSDAIPAVESSDSLHNPSPNALPYTYTHNHTPTRSHSFISPFSCFSNRAFRSRDIRAVEPNRLFVAEPVSARSCSFVGTHEYVSPEVAAGRSHGNAVDWWSFGVFIYELIYGRTPYAGPSKEATLRNIVKKPLAFPTATPASGLELHARDLISGLLNKDPARRLGSKRGAADVKKHPFFKGLNLALIRMQTPPQVPGSRRTKTTSLYPVKGNSSNNHLHKQQQTASFDFFF* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03250 475 FunFam protein kinase PINOID 2 81 175 - -
Lapu3g03250 475 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Lapu3g03250 475 Gene3D Phosphorylase Kinase; domain 1 81 175 - -
Lapu3g03250 475 FunFam protein kinase PINOID 176 244 - -
Lapu3g03250 475 Pfam Protein kinase domain 83 243 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g03250 475 Pfam Protein kinase domain 317 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g03250 475 Gene3D Transferase(Phosphotransferase) domain 1 316 441 - -
Lapu3g03250 475 PANTHER FLIPPASE KINASE 1-RELATED 24 446 - -
Lapu3g03250 475 ProSiteProfiles Protein kinase domain profile. 83 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g03250 475 MobiDBLite consensus disorder prediction 1 22 - -
Lapu3g03250 475 SUPERFAMILY Protein kinase-like (PK-like) 63 445 IPR011009 -
Lapu3g03250 475 Gene3D Transferase(Phosphotransferase) domain 1 176 243 - -
Lapu3g03250 475 FunFam serine/threonine-protein kinase D6PK-like 315 441 - -
Lapu3g03250 475 SMART serkin_6 83 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03250 Lapu-Chr3 55811380 55813881 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03250 25 474 AGC Kinase Gene Family AT2G34650 64.097 0.0 561
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Lapu3g03250 Pkinase 4.5e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03250 - - vun:114177159 835.484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03250 3 55811380 55813881 Lapu3g03250 3 55811380 55813881 ECH