Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03244 ATGCAGAGCCAACTTGTGTGCAATGGTTGTAGGAGCCTTCTGCTTTACCCGAGAGGGGCAACCAATGTTTGTTGTGCATTGTGCAACACGATTACCTCTGTTCCTCCACCTGGGATGGAAATGTCTCAACTTTACTGTGGAGGTTGTAGGACGTTGCTAATGTACACTCGTGGAGCTACAAGTGTGAGATGTTCCTGCTGTCACACTGTAAACCTTGTTCCAGGCGCATCTAATCAGGTAGCTCATGTCCATTGTGGGAACTGCCGGACAACCCTCATGTATCCTTATGGAGCTCCCTCAGTCAAATGTGCTATTTGTCACTATATTACTAATGTCGGTATGAACAATGGACGGCTGCCAATCCCTGTCCATAGACCCAATGGAACAACCAATGCTGGAACATTACCTTCTACTTCAACATCTATGCCTCAATCTCAAAGTCAAACAGTAGTAGTAGAAAATCCAATGTCTGTGGATTCAAGTGGGAAATTGGTGAGCAATGTTGTTGTTGGCGTCACAACAGATAAGAAATAG 534 0.4513 MQSQLVCNGCRSLLLYPRGATNVCCALCNTITSVPPPGMEMSQLYCGGCRTLLMYTRGATSVRCSCCHTVNLVPGASNQVAHVHCGNCRTTLMYPYGAPSVKCAICHYITNVGMNNGRLPIPVHRPNGTTNAGTLPSTSTSMPQSQSQTVVVENPMSVDSSGKLVSNVVVGVTTDKK* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03244 177 PANTHER PROTEIN LSD1 2 176 IPR040319 -
Lapu3g03244 177 Pfam LSD1 zinc finger 46 70 IPR005735 -
Lapu3g03244 177 Pfam LSD1 zinc finger 85 109 IPR005735 -
Lapu3g03244 177 Pfam LSD1 zinc finger 7 31 IPR005735 -
Lapu3g03244 177 NCBIfam zinc finger domain, LSD1 subclass 43 73 IPR005735 -
Lapu3g03244 177 NCBIfam zinc finger domain, LSD1 subclass 82 111 IPR005735 -
Lapu3g03244 177 NCBIfam zinc finger domain, LSD1 subclass 4 34 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03244 Lapu-Chr3 55747832 55752912 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Lapu3g03244 zf-LSD1 8.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03244 - - gmx:100776394 355.525