Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03242 ATGAAACAGTTGAAATTGGCTGCAGAATCTCACGCTATAGAGGAAAATCTTCTTAGGCATAAGCCAGAAATGGAAATCACATTTGAGTCTTCTACCAGTCCGCAGCACAAAAAGATATCAGCCAGATGGGATTCGGTTGAAGCATGTCGGCCTATAATTGATGAAGCACCTATGTTCTATCCAACTATTGAGGAGTTTGAAGACACACTTGGTTACATAGCTAAGATTCGCCCCCAAGCTGAACCTTATGGTATATGTAAGATTGTCCCTCCAGCTTGCTGGGTACCACCATGCCCTCTTAAGGAGAAAGATTTATGGGAAAATGCAAAGTTTCCCACTCGTATCCAGCAAATTGATTTGCTTCAGAACAGGGAGCCCATGAGAAAGAAAATTAGGGGAAGGAAGCGAAAACGTAGAAAGCAATCAAAGATGGGCGCAGGTAGAAGAACTGCTAAATCAGTTTCGGAAGGTAATGTTGCTTCTGAGCCAGAGGAGAAGTTTGGATTCCAATCAGGGCCAGACTTCACACTTAAAGACTTTCAGCAATATGCTAAGGTTTTTAAAGATTGCTACTTTGGATTGAATGATGCCAATGAATATGGAAAAGTTGGCGATTATAGTCACTGGCAGAGATGGGAGCCCTCTGTGGAGGACATTGAAGGTGAATACTGGAGAATAATAGAACAACCAACAGATGAGGTTGAGGTGTATTATGGAGCTGACTTGGAAACTGGATCACTTGGAAGTGGCTTTCCTAAGACATCGTCCTTAACTAAAAATGATTCAGATAGATATGCTGTGTCTGGCTGGAATCTGAATAACTTCCCCCGACTGCCAGGTTCTGCATTATGTTTTGAAGGAAGTGATATCTCAGGAGTTCTAGTTCCGTGGCTGTATGTTGGAATGTGCTTTTCCTCATTTTGCTGGCATGTTGAAGACCATCACCTCTATTCACTTAATTATCTGCATTGGGGTGACCCTAAAGTATGGTATGGAGTACCTGGAACTCATGCTCCAAGTTTGGAAGATGCAATGAGAAAGCACTTGCCTGATTTATTTGAAGAACAACCAAATCTACTCAATGAATTGGTGACTCAGTTATCTCCTTCAATTCTTAAATCTGAGGGAGTGCCTGTACATCGCACTGTTCAGAATTCAGGGGAATTTGTTGTTACCTTTCCAAGGGCATACCACTGTGGCTTCAATTGTGGCTTTAACTGCGCAGAGGCTGTGAATGTGGCTCCCGTTGATTGGCTTGTGCACGGCCAGAATGCTGTTGAGCTTTACAGTTTGCAGTGTCGTAAGACTTCATTGTCTCATGACAAGTTATTATTTGGATGTGCTCAGGAAGCCGTCTGTGCCTTTGCAGAGCTAACTCTTCATGAAAAAGAAAATCTAAAATATATAAAATGGAGTCCTGTTTGTGGGAAAGATGGTGTTCTCACCAAGGCAATTAAGACAAGGATAACTATGGAAAAGGAGAGGCTTGAATGTCTTCCCACTCATTTGAAGAAGGTTAAGATGAACAGTGAGTTTGATTTGTTTGAGGAAAGAGAATGCTTCTTTTGCTTCTATGACTTGCACCTATCTGCCGTGGGTTGCAAGTGCTCCCCCGATAGTTATTCTTGTCTCAAACACTCACATTTGTTTTGCTCTTGTGAAATGGACAAAAGCTTTGTTCTGTTTCGTTATACCATGAATGAACTAAGTACATTGGTTGAGGCATTAGAAGGAGAAGCACATGCTATTGAAGTGTGGGCAAATAGAAACACCGGACTGGTTTCTGCTAACGCTGAGAATGCTTGCATGTATAAACAAAATGCGGAGAGTTACAAAGGAGAGAAAAGCTTAACATATTGTACAGAAACCAATGATAAGTCAAATTCAAATATACCTAGCAGTTCTTACAGCCACATTTCTGCAGAGTTAGTCCACTCAGAGTTTCACCACAACACTAAAGATTGTCAAAAAGATATTGTGAATGAAAAAAATTTGGTCATGTACAATGAAGATAAGATGAAAGGAGGTTCTCTTGATTTGAATATTGATGTTACGTTTGTTGAACCTGAAAACTATTTTCTGCATGCTGCTGAATACCATCGTAACAAGAGTGTTCCATGTGCTGGAAAAGTGTGCTATTCAGAGGTCAGAAAGGAACAAGACAACATGGAACCTGGGGTTGGATGTACAGCTGCCTTGGAGAAAGAATTTTCATCATGTTCAAGGGACGTTGAAAATTCTTTTACACTAGATGGTTGTAAATTGTTTGGGGTGGATCTTCAGATGCATTCTGACTCGAGAGAACAACTCAACGGTGTATTTAAAATAGGTGATGTTGAAACCTCCAATACAAGTATTTCTTTGACAAACCAACACTTCTTAATGCAGAAGATTGGTGTATGTGTTGAGCCTGTGAATTTGGGCATTGTTATGTGTGGTAAGTTATGGTGCAGTAAGCATGCAATATATCCAAAAGGATTTAAGAGTCGTGTTCAGTTCTTAAGCATTCTTGATCCACCAAGAATTTGTAACTATGTTTCTGAAGTCTATGATGCCGGATTTCTTGGGCCTGTTTTCAAGGTTACCATGGAAGAGCATCCTGGTGAGGCCTTCACAAACACTTCAGTAGATAAGTGCTGGGAGTCAGTTCTTGACAGACTAAATCATGAAACCAAGAAGCTAAGGAATCAAGGTGAAAGAGAACTTCCTCCCTTGGAGCTTCTGCAAAGCATTAATGGTCATAAAATGTTTGGATTCCTTTCGCCATCCATTATTCAGGCTATTGAAGCTCTGGATCCCAATCATCAATGCGCGGAGTACTGGAATCATAAAGAAGTTGTCTCTGAATCTTCAGACAGTGGCATTGATGACTGTAAGCTCAGTCATGGTTCTAGTAACTCTCTAAGTGATGTCAAGACCAGACTTTTTAGTCCTGATTTGAGAAAGCTGGAACAAGATAGCAGCAGAGGACACTGTGATTCTTTTGAAGAGATGAAATTGGTGCTAGAAGGATTATTGAAAAAGGCGAGTGCTGAAGAATTAAGTGCCATGCACAAGTTATTCAGCTCTGATGCACAGTTCAATAAGTGGAGAATGGCATTTGTAATGCTGATAGAGGAAATCCAGAAAGATTGTGCATAA 3141 0.4072 MKQLKLAAESHAIEENLLRHKPEMEITFESSTSPQHKKISARWDSVEACRPIIDEAPMFYPTIEEFEDTLGYIAKIRPQAEPYGICKIVPPACWVPPCPLKEKDLWENAKFPTRIQQIDLLQNREPMRKKIRGRKRKRRKQSKMGAGRRTAKSVSEGNVASEPEEKFGFQSGPDFTLKDFQQYAKVFKDCYFGLNDANEYGKVGDYSHWQRWEPSVEDIEGEYWRIIEQPTDEVEVYYGADLETGSLGSGFPKTSSLTKNDSDRYAVSGWNLNNFPRLPGSALCFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVPGTHAPSLEDAMRKHLPDLFEEQPNLLNELVTQLSPSILKSEGVPVHRTVQNSGEFVVTFPRAYHCGFNCGFNCAEAVNVAPVDWLVHGQNAVELYSLQCRKTSLSHDKLLFGCAQEAVCAFAELTLHEKENLKYIKWSPVCGKDGVLTKAIKTRITMEKERLECLPTHLKKVKMNSEFDLFEERECFFCFYDLHLSAVGCKCSPDSYSCLKHSHLFCSCEMDKSFVLFRYTMNELSTLVEALEGEAHAIEVWANRNTGLVSANAENACMYKQNAESYKGEKSLTYCTETNDKSNSNIPSSSYSHISAELVHSEFHHNTKDCQKDIVNEKNLVMYNEDKMKGGSLDLNIDVTFVEPENYFLHAAEYHRNKSVPCAGKVCYSEVRKEQDNMEPGVGCTAALEKEFSSCSRDVENSFTLDGCKLFGVDLQMHSDSREQLNGVFKIGDVETSNTSISLTNQHFLMQKIGVCVEPVNLGIVMCGKLWCSKHAIYPKGFKSRVQFLSILDPPRICNYVSEVYDAGFLGPVFKVTMEEHPGEAFTNTSVDKCWESVLDRLNHETKKLRNQGERELPPLELLQSINGHKMFGFLSPSIIQAIEALDPNHQCAEYWNHKEVVSESSDSGIDDCKLSHGSSNSLSDVKTRLFSPDLRKLEQDSSRGHCDSFEEMKLVLEGLLKKASAEELSAMHKLFSSDAQFNKWRMAFVMLIEEIQKDCA* 1047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03242 1046 ProSiteProfiles JmjC domain profile. 264 430 IPR003347 -
Lapu3g03242 1046 Pfam jmjN domain 57 90 IPR003349 -
Lapu3g03242 1046 Pfam JmjC domain, hydroxylase 297 413 IPR003347 -
Lapu3g03242 1046 Gene3D Cupin 41 414 - -
Lapu3g03242 1046 MobiDBLite consensus disorder prediction 127 166 - -
Lapu3g03242 1046 Pfam C5HC2 zinc finger 520 572 IPR004198 -
Lapu3g03242 1046 Gene3D - 801 938 - -
Lapu3g03242 1046 ProSiteProfiles FYR domain FYRN motif profile. 794 852 IPR003888 GO:0005634
Lapu3g03242 1046 FunFam Putative lysine-specific demethylase JMJ16 800 938 - -
Lapu3g03242 1046 SUPERFAMILY Clavaminate synthase-like 260 451 - -
Lapu3g03242 1046 MobiDBLite consensus disorder prediction 128 146 - -
Lapu3g03242 1046 PANTHER LYSINE-SPECIFIC DEMETHYLASE 51 760 - -
Lapu3g03242 1046 Pfam F/Y-rich N-terminus 805 849 IPR003888 GO:0005634
Lapu3g03242 1046 ProSiteProfiles FYR domain FYRC motif profile. 854 944 IPR003889 GO:0005634
Lapu3g03242 1046 SMART JmjN_1 55 96 IPR003349 -
Lapu3g03242 1046 SMART fyrc_3 858 952 IPR003889 GO:0005634
Lapu3g03242 1046 SMART fyrn_3 808 852 IPR003888 GO:0005634
Lapu3g03242 1046 Pfam F/Y rich C-terminus 856 943 IPR003889 GO:0005634
Lapu3g03242 1046 ProSiteProfiles JmjN domain profile. 56 97 IPR003349 -
Lapu3g03242 1046 SMART cupin_9 264 430 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03242 Lapu-Chr3 55726558 55734549 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03242 796 980 JUMONJI Transcription Factor Family AT1G30810 52.973 5.00e-53 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lapu3g03242 JmjC 2e-45 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03242 K11446 - gmx:100784581 1794.25