Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03237 ATGGGTTTGTCTTCTGAACTAGTTGTTCATTCTGGCTTATTATTACTCATTCTCCTCCACCTTCACCTACACTGCCTCTTCATCGGTGTATCAGCAGCCACTTTAAGCATCACCACTGACAGAGAAGCCTTGATCTCATTCAAGTCTCAACTCTCAAATGACACTCTTAATCCCTTGTCTTCTTGGAACCATAATTCATCTCCTTGCAATTGGACTGGTGTCCAATGTGACAGGCTTGGCCAAAGAGTGACAGCCCTGGACCTTTCTGGCTTCGGACTCTCAGGTCACTTGAGTCCTTCTATTGGTAATCTCTCCTCTCTTCAGTCCCTCCAATTGCAGAATAACCAACTCACTGGACTCATCCCTCACCAAATTTCCAACCTGATCAGTTTGAGAGTTCTAAATATGAGCTCTAACATGTTAGAAGGAAAGCTTCCTTCAAACATCTCCAACTTGAACGAGCTCCAGATTCTTGATTTGTCCTCAAACAAGATTGTCAGCAAGATTCCTGAAGACATCAGCAGCTTGAAAAAGCTTGAGGTTTTGAAACTGGAAAGGAATAGCCTCTACGGTTCAATCCCAGCATCTCTAGGGAACATTTCTTCTCTCAAAAATATCAGTTTTGGCACAAACTTTCTCAGTGGTTGGATTCCCAGTGACTTGGGTAGGCTGCATGATTTGATTGAACTTGATCTCGTTCTTAACAATCTCAACGGGACTGTTCCACCTGTTATATACAACTTATCTTCCCTCGTTAACTTTGCCTTAGCTTCAAACTCCTTGTGGGGTGATATTCCTCAGGATGTTGGTCACAAACTTCCAAAACTCATAGTGTTCAATATCTGCTTCAATTATTTCACAGGAGGAATTCCAGGGTCTTTGCACAACCTCACCAACATTCAGGTCATTCGCATGGCTTCGAACTTTTTGGAAGGAACAGTGCCACCGGGTTTGGGAAATCTCCCATTTCTTCGCATGTATAATATCGGTTTTAACAGGATAGTGAGTTCGGGTGTCAGAGGTTTAGACTTCATTACTTCTTTGACAAACAGTACTCAACTCAACTTTCTGGCAATTGATGGAAATATGCTAGAAGGTGTGATTCCTGAAAGCATTGGCAATCTCTCCAAGGATCTGTCAACATTATACATGGGACAGAATCGTTTCAATGGAAGCATACCCCCCTCCATTGGTCGACTTAGTGGCTTGAAGTTGTTAAACTTGAGCTACAATTCAATCTCTGGAGAAATCCCACATGAGTTAGGCCAGTTGGCGGAATTACAAGAACTATCTCTGGCTGGAAATGAGATATCAGGGGTTATTCCAGATTCCTTTGGTAATCTCCTCAAGTTAAACCTGGTTGATGTATCAAGAAACAAACTTGTGGGGAGAATACCTTCCAGTTTTGGGAGTTTGCAAAGTCTGCTTTACATGGACTTATCAAGCAACCAACTCGATGGAAGCATTCCTGTGGAAATCCTCAATCTCCCAACTTTGAGCAATGTTTTGAACTTGTCAATGAACTCTTTGAGTGGACCAATACCTCAAATTGGGAGGTTGAGTGGTGTTGCCTCCATTGACTTTTCTAGCAACCAATTGTATGGTGGCATCCCCAGCTCATTCAGCAATTGTCTAAGCTTGGAAAAATTGATTTTGGCCAGGAATCAGCTTTCAGGTTCCATTCCAAAAGCTCTTGGAGAAGTGAGAGGCTTGGAAACTTTGGACCTATCCTCCAACCAACTCTCTGGAACTATTCCTGTTGAACTTCAAAATTTACAGGTGCTTAAGCTCTTAAACCTCTCGTACAATGATTTAGAAGGAGCCATTCCAAGTGGTGGAGTTTTCCAAAATCTCTCTTCTGTGCATTTAGAAGGCAATGGAAATCTCTGCTTTCAATTCCCCTGTGTAAATGGTGGCCAGGGAAGAAGAAATGTAAGACATTACATCATCATAGCCGCTATAGTAGCATTGGTACTGTGTCTCACAATTGGCTCAATGTTATATATAAAGAGCAGAAACGTGAAGGTAGCAGGAGCAGCGTCATCATCATCATCATTTGAACAGCTAAAACCTCTTGCACCAATGATCTCTTATGATGAGCTTCGTTTGGCAACTGCGGAGTTCAACCAGGAAAACTTATTAGGAGTTGGGAGCTTTGGCTCAGTTTACAAAGGCAATCTTAGTCATGGAACTACAGTTGCAGTGAAAGTTCTTGACACCCTAAGAACTGGCTCTCTAAAGAGTTTCTTAGCAGAGTGTGAGGCTATGAAGAACTCGAGGCATCGAAATCTGGTTAAGCTAATCACAGCATGCTCTAGTGTTGACTTCAAAAACAATGACTTTCGGGCTCTGGTGTACGAGTATCTGTGCAATGGTAGCTTGGAAGATTGGATTAGAGGGAGGAGAAAGCATGGAAACGGAAATGGGTTGAACCTTATGGAGAGACTGAACATAGCAATAGATGTTGCATGTGCATTGGATTACCTGCACAATGATAGTGAAATCCCAGTTGTGCACTGTGATTTGAAGCCTAGCAACATTCTATTGGACGCAGACATGATAGCAAAGGTTGGAGACTTTGGATTGGCTAGGTTGCTTATTCAAAGATCAAGTAATCATGTTTCCATTAGCTCAGGCCATGGTCTTAGAGGTTCAATTGGTTACATACCTCCAGAATATGGATGGGGAGAAAAAGCAAGTGCTGGTGGAGATGTGTATAGTTTTGGTGTAGTGTTGCTAGAACTATTCTCTGGGAAAAGCCCAACAGATGAATGCTTCACAGGAGGCCTAAGCATAAGAAGATGGGTGGAGTCAGCATTGAAAGAGAAGACAGTGGAAGCCATTGACCCTGAGTTGGTGTCCCTCATTTTGCATGATGACCCTTCAGAGGGACCAAATAACCTACAACTGTGTTGTGTGCATGCAATTGTAGGGGTAGCCATATCTTGCACTGCAGACAACCCAGATGAACGCATTGGCATTAGAGACGCTGTTCGCCAACTCAAAGCTTCTAGAGACTCTTTTCAATCACTCTGA 3036 0.4279 MGLSSELVVHSGLLLLILLHLHLHCLFIGVSAATLSITTDREALISFKSQLSNDTLNPLSSWNHNSSPCNWTGVQCDRLGQRVTALDLSGFGLSGHLSPSIGNLSSLQSLQLQNNQLTGLIPHQISNLISLRVLNMSSNMLEGKLPSNISNLNELQILDLSSNKIVSKIPEDISSLKKLEVLKLERNSLYGSIPASLGNISSLKNISFGTNFLSGWIPSDLGRLHDLIELDLVLNNLNGTVPPVIYNLSSLVNFALASNSLWGDIPQDVGHKLPKLIVFNICFNYFTGGIPGSLHNLTNIQVIRMASNFLEGTVPPGLGNLPFLRMYNIGFNRIVSSGVRGLDFITSLTNSTQLNFLAIDGNMLEGVIPESIGNLSKDLSTLYMGQNRFNGSIPPSIGRLSGLKLLNLSYNSISGEIPHELGQLAELQELSLAGNEISGVIPDSFGNLLKLNLVDVSRNKLVGRIPSSFGSLQSLLYMDLSSNQLDGSIPVEILNLPTLSNVLNLSMNSLSGPIPQIGRLSGVASIDFSSNQLYGGIPSSFSNCLSLEKLILARNQLSGSIPKALGEVRGLETLDLSSNQLSGTIPVELQNLQVLKLLNLSYNDLEGAIPSGGVFQNLSSVHLEGNGNLCFQFPCVNGGQGRRNVRHYIIIAAIVALVLCLTIGSMLYIKSRNVKVAGAASSSSSFEQLKPLAPMISYDELRLATAEFNQENLLGVGSFGSVYKGNLSHGTTVAVKVLDTLRTGSLKSFLAECEAMKNSRHRNLVKLITACSSVDFKNNDFRALVYEYLCNGSLEDWIRGRRKHGNGNGLNLMERLNIAIDVACALDYLHNDSEIPVVHCDLKPSNILLDADMIAKVGDFGLARLLIQRSSNHVSISSGHGLRGSIGYIPPEYGWGEKASAGGDVYSFGVVLLELFSGKSPTDECFTGGLSIRRWVESALKEKTVEAIDPELVSLILHDDPSEGPNNLQLCCVHAIVGVAISCTADNPDERIGIRDAVRQLKASRDSFQSL* 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03237 1011 SUPERFAMILY L domain-like 379 630 - -
Lapu3g03237 1011 FunFam LRR receptor-like serine/threonine-protein kinase EFR 679 788 - -
Lapu3g03237 1011 Gene3D Ribonuclease Inhibitor 35 236 IPR032675 -
Lapu3g03237 1011 PANTHER UNNAMED PRODUCT 17 118 - -
Lapu3g03237 1011 ProSiteProfiles Protein kinase domain profile. 708 977 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g03237 1011 FunFam Receptor protein kinase CLAVATA1 36 194 - -
Lapu3g03237 1011 CDD STKc_IRAK 714 1002 - -
Lapu3g03237 1011 SUPERFAMILY Protein kinase-like (PK-like) 685 1001 IPR011009 -
Lapu3g03237 1011 SUPERFAMILY L domain-like 38 334 - -
Lapu3g03237 1011 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 234 341 - -
Lapu3g03237 1011 Gene3D Ribonuclease Inhibitor 237 338 IPR032675 -
Lapu3g03237 1011 Pfam Protein tyrosine and serine/threonine kinase 710 925 IPR001245 GO:0004672|GO:0006468
Lapu3g03237 1011 PRINTS Leucine-rich repeat signature 571 584 - -
Lapu3g03237 1011 PRINTS Leucine-rich repeat signature 592 605 - -
Lapu3g03237 1011 SMART LRR_typ_2 424 447 IPR003591 -
Lapu3g03237 1011 SMART LRR_typ_2 104 127 IPR003591 -
Lapu3g03237 1011 SMART LRR_typ_2 152 176 IPR003591 -
Lapu3g03237 1011 SMART LRR_typ_2 592 617 IPR003591 -
Lapu3g03237 1011 SMART LRR_typ_2 400 423 IPR003591 -
Lapu3g03237 1011 SMART LRR_typ_2 472 496 IPR003591 -
Lapu3g03237 1011 SMART LRR_typ_2 568 591 IPR003591 -
Lapu3g03237 1011 SMART LRR_typ_2 128 151 IPR003591 -
Lapu3g03237 1011 ProSiteProfiles Leucine-rich repeat profile. 570 593 IPR001611 GO:0005515
Lapu3g03237 1011 FunFam Inactive leucine-rich repeat receptor-like protein kinase 346 637 - -
Lapu3g03237 1011 Pfam Leucine rich repeat N-terminal domain 39 77 IPR013210 -
Lapu3g03237 1011 ProSitePatterns Protein kinases ATP-binding region signature. 714 736 IPR017441 GO:0005524
Lapu3g03237 1011 Gene3D Transferase(Phosphotransferase) domain 1 789 1010 - -
Lapu3g03237 1011 Gene3D Phosphorylase Kinase; domain 1 690 788 - -
Lapu3g03237 1011 Pfam Leucine rich repeat 426 485 IPR001611 GO:0005515
Lapu3g03237 1011 Pfam Leucine rich repeat 546 605 IPR001611 GO:0005515
Lapu3g03237 1011 Gene3D Ribonuclease Inhibitor 339 637 IPR032675 -
Lapu3g03237 1011 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 789 1011 - -
Lapu3g03237 1011 ProSiteProfiles Leucine-rich repeat profile. 154 176 IPR001611 GO:0005515
Lapu3g03237 1011 SMART serkin_6 708 977 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g03237 1011 Pfam Leucine Rich Repeat 130 152 IPR001611 GO:0005515
Lapu3g03237 1011 SMART LRR_sd22_2 424 445 - -
Lapu3g03237 1011 SMART LRR_sd22_2 152 175 - -
Lapu3g03237 1011 SMART LRR_sd22_2 568 594 - -
Lapu3g03237 1011 SMART LRR_sd22_2 104 130 - -
Lapu3g03237 1011 SMART LRR_sd22_2 224 250 - -
Lapu3g03237 1011 ProSitePatterns Serine/Threonine protein kinases active-site signature. 837 849 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03237 Lapu-Chr3 55662207 55665403 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03237 1 1010 Receptor kinase-like Gene Family AT5G20480 41.456 0.0 711
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Lapu3g03237 PK_Tyr_Ser-Thr 4.8e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03237 - - gmx:102664710 1645.56