Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03206 ATGGATGGTCATGGCATTTGCAAAAGCTCTCCAAATAGGGATCATGAAGGCCATAATGAAGCGGTTTTCTTACATGGTGACTTGGATGTATTGATAATAGAAGCCAAGTCTCTCCCAAATTTAGATTTATCTTCTGAAGCAGTTAGAAAATGTATGACTATGGGCAACATGTGCCATCCTCCATTTATAAAAGGACTAAAGTCTCACTCTGGAAAAGATAAGATGATAACAAGCGACCCTTATGTTTCAGTATGCATATCTGGGGCAACCATTGCTCGAACTAGAGTGATTCCTAACTGTGAGAACCCTGTGTGGGATGAGCACTTTATTGTTCCTGTTGCTCACCCTGCTCTGAAAGTGGAGTTCCTTGTGAAGGATAATGATATTCTTGGGGCTGAACTCATTGGAGTGGTGGAAATACCTGTTTACAAGATAGTTTCAGGAAATGCTATCAATGATTGGTTTCCTATCATTGGTCAGTATGGAAACTGCTTAAAACCTTATCCTGAATTGCATATTTCAGTTCAATATAAGCCAATTGGAGTGAACCGTTCACAAAAAAGAATTAATGAGGATGGGACAGCACATTTAGGAGTTTCTAAAACCTATTTCCCTCTCAGGAAAGGAGGGAGTGTGACTCTATATCAAGATGCACATATATCAGATGGTATGCTACCTGAAATTCCACTTGAGGGTGGAAAAGTATTTCAGCAAAGTAAATGTTGGGAGGAAATATGCCATGCAATTTTGGAAGCTCATCACATGATATACATTATAGGATGGTCAGTTTACCACCCAGTGAGACTTGTCAGAGAGGCAACAAAACCAATACCTTCAGGGGGAGAGCTTTCACTTGGAGAGCTGTTGAAGTACAAGTCACAAGAAGGACTCCGAGTGGTTATGCTGATTTGGGACGACAGAACTTCACATGACAAGTTTCTTTTGAAAACAGATGGTGTCATGCAGACTCATGATGAAGAAACTAAGAAGTTTTTTAAACATTCCACTGTTCATTGCGTGCTATCTCCACGTTACGCAAGCAATAAGCTCAGTATTTTCAAGCAACAGGTTGTGGGTACCCTCTTTACACATCACCAGAAATGTGTGATTGTAGACAGTCTAGGTTCTGGGAATAATCGGAAAATAACAGCTTTTATTGGTGGTTTGGATCTATGTGATGGTAGATATGATACCCCTGAGCATCGGCTTTTTCGTGATCTAGATACAGTCTTTCATAATGATTTTCACAATCCTACTTTTCAACAATTAAGTTCGAATTCGTGTGCCCCAAGGCAACCATGGCATGACTTACATTGCAAAATTGAAGGTCCAGCAGCTTATGATATATTAACCAATTTTGAACAAAGATGGAGGAAGGCCAAAAAATGGCGTGACTTCAGGCTCAAAAAGGTGACAAACTGGCATGATGATGCTTTGCTTCGGCTGGACCGAATTTCATGGATTGTCAAACCTGCTCCTTGCCCCAGTGGTGATAAAGCTGTTTATGTAACCGATGAAAGTGATCCTGAGAGTTGGAATGTGCAGGTGTTTAGGTCCATAGATTCTGGATCTGTAAAGGGCTTTCCAAAGGATGTTGACAAAGCTAAGGCTCAGAATCTTTTGTGCGGAAAAAATTTGAAAGTTGATCAAAGCATCCATACTGCTTATGTAAAAGCAATAAGATCAGCCGAGCACTTTGTATATATTGAGAATCAGTATTTTTTGGGCTCCTCCTACCATTGGCCTTCATATAAAAATAAAGCAGGTGCAAACCACTTGGTTCCCATGGAGTTGGCTTTGAAAATTGCTGGTAAGATCAGTGTAAATGAACGTTTTTGTGTATATATAGTTATACCAATGTGGCCAGAGGGTGTTCCAACAAGTGCTGCTGTTCAAGAAATCTTGTTCTGGCAGGGACAGACAATGTCTATGATGTACAAGATTGTAGCTGATGCCCTTGAAAAAGCAGGTCTATCCGATCAGTATCATCCACAAGATTATCTCAATTTTTACTGCCTTGGAAAGAGAGAACCCCAATGTTCAAATACTTCTTCAACACCAAATCCATCTGAAAACCGTGCTTTGGTAGCAGTAAAAAAATTCAGACGTTTTATGATTTATGTTCATGCCAAAGGAATGATAGTTGATGATGATTACGTAATTATTGGATCAGCAAATATTAACCAGAGATCATTAGATGGTTCAAGGGACACAGAAATAGCTATGGGAGCTTATCAACCAAAATATACATGGACAGAAAATAGATCGCATCCACGTGGCCAGGTGTATGGATACAGAATGTCACTATGGGCTGAGCACCTTGGTAGTCTTGACAATGTTTTTCGTGAACCTCAGAGCTTGGAATGTGTTAGACAAGTCAACAAAATTGCAAAACAAAATTGGGGCGTATATGTGGCTGATGAAGGGAATTACATGAGGGGACATTTGATGCAGTATCCAGTTAAGATCAGCAGGGATGGAAAAGTGAGTCCACTGGATGATTATGAGTCCTTTCCTGATGTTGGTGGAAAAATTCTTGGATCACCAAACTCACTTCCAGATGCACTAACCACCTGA 2577 0.4016 MDGHGICKSSPNRDHEGHNEAVFLHGDLDVLIIEAKSLPNLDLSSEAVRKCMTMGNMCHPPFIKGLKSHSGKDKMITSDPYVSVCISGATIARTRVIPNCENPVWDEHFIVPVAHPALKVEFLVKDNDILGAELIGVVEIPVYKIVSGNAINDWFPIIGQYGNCLKPYPELHISVQYKPIGVNRSQKRINEDGTAHLGVSKTYFPLRKGGSVTLYQDAHISDGMLPEIPLEGGKVFQQSKCWEEICHAILEAHHMIYIIGWSVYHPVRLVREATKPIPSGGELSLGELLKYKSQEGLRVVMLIWDDRTSHDKFLLKTDGVMQTHDEETKKFFKHSTVHCVLSPRYASNKLSIFKQQVVGTLFTHHQKCVIVDSLGSGNNRKITAFIGGLDLCDGRYDTPEHRLFRDLDTVFHNDFHNPTFQQLSSNSCAPRQPWHDLHCKIEGPAAYDILTNFEQRWRKAKKWRDFRLKKVTNWHDDALLRLDRISWIVKPAPCPSGDKAVYVTDESDPESWNVQVFRSIDSGSVKGFPKDVDKAKAQNLLCGKNLKVDQSIHTAYVKAIRSAEHFVYIENQYFLGSSYHWPSYKNKAGANHLVPMELALKIAGKISVNERFCVYIVIPMWPEGVPTSAAVQEILFWQGQTMSMMYKIVADALEKAGLSDQYHPQDYLNFYCLGKREPQCSNTSSTPNPSENRALVAVKKFRRFMIYVHAKGMIVDDDYVIIGSANINQRSLDGSRDTEIAMGAYQPKYTWTENRSHPRGQVYGYRMSLWAEHLGSLDNVFREPQSLECVRQVNKIAKQNWGVYVADEGNYMRGHLMQYPVKISRDGKVSPLDDYESFPDVGGKILGSPNSLPDALTT* 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03206 858 SUPERFAMILY Phospholipase D/nuclease 201 465 - -
Lapu3g03206 858 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 360 395 IPR001736 GO:0003824
Lapu3g03206 858 SUPERFAMILY Phospholipase D/nuclease 550 789 - -
Lapu3g03206 858 ProSiteProfiles C2 domain profile. 8 155 IPR000008 -
Lapu3g03206 858 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 704 731 IPR001736 GO:0003824
Lapu3g03206 858 FunFam Phospholipase D delta 232 478 - -
Lapu3g03206 858 PANTHER PHOSPHOLIPASE D 19 847 IPR015679 -
Lapu3g03206 858 PIRSF PLD_plant 13 858 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Lapu3g03206 858 Pfam Phospholipase D Active site motif 361 395 IPR001736 GO:0003824
Lapu3g03206 858 Pfam Phospholipase D Active site motif 705 731 IPR001736 GO:0003824
Lapu3g03206 858 Gene3D Endonuclease Chain A 232 479 - -
Lapu3g03206 858 CDD C2_plant_PLD 21 177 - -
Lapu3g03206 858 SMART C2_3c 27 154 IPR000008 -
Lapu3g03206 858 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 24 179 IPR035892 -
Lapu3g03206 858 Pfam C2 domain 26 157 IPR000008 -
Lapu3g03206 858 Gene3D C2 domain 22 178 IPR035892 -
Lapu3g03206 858 Pfam Phospholipase D C terminal 778 848 IPR024632 -
Lapu3g03206 858 Gene3D Endonuclease Chain A 516 755 - -
Lapu3g03206 858 SMART pld_4 360 395 IPR001736 GO:0003824
Lapu3g03206 858 SMART pld_4 704 731 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03206 Lapu-Chr3 55423444 55434750 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03206 16 857 Phospholipase D Gene Family (Wang group) AT2G42010 53.617 0.0 923
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03206 K01115 - gmx:100810824 1609.35