Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03202 ATGGAGATTCACTACAGTAGCAGCTACTTCGAAAGACGCCCCATTCTTAAGTCCAAGGCTCCCGCGGTTAAATGGGTTAAAGAATGGGTTCCCCAAGATCTTGTAACAACTGGAGGAAAATGCATGCTCTTAAAATGGGTAACAGAGGATACCTTGAAGACCTTGAAAGAAAAGACAATAGAGCCAACAATGCCTGAGCCAGAACCAGAGCCAACTACTGAAGTACTTTTTCTTTGCAGCTATGATGGATGTGGAAAGACATTCATAGATGCTGGTGCATTGAGGAAGCATTCTCACATCCATGGAGAGAGGCAATATGTCTGTCACTACGATGGATGTGGAAAGGTGAAATTTCTGGATAGCTCAAAGTTGAAAAGACATTTTCTTATTCATACAGGGGAGAGGGATTTTGTCTGTCCTCATGAAGGCTGTGGTAAGGCCTTCTCGTTGGATTTCAACTTAAGGTCTCACATGAAAACACATTCTCAAGAGAACTATCATATCTGCCCATACCCAGATTGTGGAAAGAGATATGCTCACGAATACAAGCTAAAGAATCACATTACATCTCATCATGAAAAGAATGCATCCGTGGATGTGACAAAATATACTACTCCACCTTCAGAGAAGCAAACAAAATCTGCTAAACCTTCTGGAGGGGCATATGGTTCTGCATCATCTGACCGTCCCTATGCATGTCCGTATGATGGGTGTGAAAAGGCATATATCCATGAATACAAGCTTAGACTTCATTTGAAGAGGGAGCACCCGGGGCTTATGCCCGAGGAAAATGCTGAGCATGCTCAAGCTAATAATGTTGACAATGAAATGGATGAAGCAAGTGACCAAGATGCGTATCTCGCGAAACGGTCAAATGGTAAAATTCAGAAGCAGAGTAGGCCTAAACCAAGTCTTAAGATGCCTCCTTCCAAAATTGGAAAACGCAAAGTTTCCACTCCCACTTTAACTGTTAATAAAAATTCTTGGCCCGTGAAAGATGAACCTTTTGATGAAGAAGATAGTGAGGAAACAGAAGAGGATCGTGACAATGTTGAAGATGGTTGGAGATATACTGGAGGAAACAACGAAGATGACGACGAAGAAACAGAATATGAAGACTGA 1122 0.4207 MEIHYSSSYFERRPILKSKAPAVKWVKEWVPQDLVTTGGKCMLLKWVTEDTLKTLKEKTIEPTMPEPEPEPTTEVLFLCSYDGCGKTFIDAGALRKHSHIHGERQYVCHYDGCGKVKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHITSHHEKNASVDVTKYTTPPSEKQTKSAKPSGGAYGSASSDRPYACPYDGCEKAYIHEYKLRLHLKREHPGLMPEENAEHAQANNVDNEMDEASDQDAYLAKRSNGKIQKQSRPKPSLKMPPSKIGKRKVSTPTLTVNKNSWPVKDEPFDEEDSEETEEDRDNVEDGWRYTGGNNEDDDEETEYED* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03202 373 ProSiteProfiles Zinc finger C2H2 type domain profile. 137 166 IPR013087 -
Lapu3g03202 373 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 136 IPR013087 -
Lapu3g03202 373 MobiDBLite consensus disorder prediction 199 221 - -
Lapu3g03202 373 FunFam Zinc finger transcription factor YY1 206 274 - -
Lapu3g03202 373 Gene3D Classic Zinc Finger 204 274 - -
Lapu3g03202 373 ProSitePatterns Zinc finger C2H2 type domain signature. 233 256 IPR013087 -
Lapu3g03202 373 Gene3D Classic Zinc Finger 163 192 - -
Lapu3g03202 373 FunFam Zinc finger protein 410 135 162 - -
Lapu3g03202 373 FunFam zinc finger transcription factor YY1 164 195 - -
Lapu3g03202 373 ProSiteProfiles Zinc finger C2H2 type domain profile. 167 196 IPR013087 -
Lapu3g03202 373 FunFam Putative zinc finger protein 143 103 134 - -
Lapu3g03202 373 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 18 347 - -
Lapu3g03202 373 ProSitePatterns Zinc finger C2H2 type domain signature. 139 161 IPR013087 -
Lapu3g03202 373 ProSiteProfiles Zinc finger C2H2 type domain profile. 231 261 IPR013087 -
Lapu3g03202 373 SUPERFAMILY beta-beta-alpha zinc fingers 72 113 IPR036236 -
Lapu3g03202 373 SUPERFAMILY beta-beta-alpha zinc fingers 118 171 IPR036236 -
Lapu3g03202 373 ProSitePatterns Zinc finger C2H2 type domain signature. 169 192 IPR013087 -
Lapu3g03202 373 MobiDBLite consensus disorder prediction 335 349 - -
Lapu3g03202 373 SUPERFAMILY beta-beta-alpha zinc fingers 226 254 IPR036236 -
Lapu3g03202 373 Pfam Zinc finger, C2H2 type 137 161 IPR013087 -
Lapu3g03202 373 MobiDBLite consensus disorder prediction 290 373 - -
Lapu3g03202 373 Gene3D Classic Zinc Finger 103 134 - -
Lapu3g03202 373 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Lapu3g03202 373 FunFam zinc finger transcription factor YY1 77 102 - -
Lapu3g03202 373 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 106 IPR013087 -
Lapu3g03202 373 SMART c2h2final6 137 161 IPR013087 -
Lapu3g03202 373 SMART c2h2final6 77 101 IPR013087 -
Lapu3g03202 373 SMART c2h2final6 167 191 IPR013087 -
Lapu3g03202 373 SMART c2h2final6 231 256 IPR013087 -
Lapu3g03202 373 SMART c2h2final6 106 131 IPR013087 -
Lapu3g03202 373 MobiDBLite consensus disorder prediction 193 228 - -
Lapu3g03202 373 Gene3D Classic Zinc Finger 135 162 - -
Lapu3g03202 373 Gene3D Classic Zinc Finger 77 102 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03202 10 357 C2H2 Transcription Factor Family AT4G06634 65.027 6.48e-142 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu3g03202 zf-C2H2 0.00037 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03202 - - gmx:100811480 664.455