Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03186 ATGACCTCTGCTCACAACCTTACTGATAATGAAGATGATGGGCAGCAGCAGTCAGAATCCCAAGTGCAGTCCCCATCTGCAAATGGAATCTCTGATTCCGGTATTGTTAACCAGAATGTCAATGTACAGTATGCAACACCTGGCCAGCTTGGAACTGGTCATGCAATGGTACCACCTGTGTATCCATATCCAGATCCTTACTATAGAAGCATCTTTGCTCCCTATGATACTCAACCTTATCCCCCACAAGCCTATAGTGGACAGCCAATGGTCCATCTTCAGTTAATGGGAATTCAACAAGCTGGTGTTCCTCTGCCAACTGATGCAGTTGAGGAGCCGGTGTTTGTCAATGCAAAACAATATCACGGTATATTGAGACGTAGACAATCTCGTGCTAAAGCTGAATCAGAAAATAAAGCTATAAGAAATAGGAAGCCATACTTGCATGAATCTCGACACATGCACGCACTGAGAAGACCGAGAGGATGTGGTGGTCGTTTTCTGAATTCAAAGAAAGAAGATAATCAGCATGATGATGTGGCACCGGGTGACAAATCACAATCCAATATCAATCTCAATTCTGAAAAAAATGATCAAACGTCATCAGATAGGACATCCTGA 621 0.4316 MTSAHNLTDNEDDGQQQSESQVQSPSANGISDSGIVNQNVNVQYATPGQLGTGHAMVPPVYPYPDPYYRSIFAPYDTQPYPPQAYSGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKAIRNRKPYLHESRHMHALRRPRGCGGRFLNSKKEDNQHDDVAPGDKSQSNINLNSEKNDQTSSDRTS* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03186 206 PRINTS CCAAT-binding transcription factor subunit B signature 113 135 IPR001289 GO:0003700|GO:0006355
Lapu3g03186 206 PRINTS CCAAT-binding transcription factor subunit B signature 144 167 IPR001289 GO:0003700|GO:0006355
Lapu3g03186 206 ProSitePatterns NF-YA/HAP2 subunit signature. 115 135 IPR018362 GO:0003677|GO:0016602
Lapu3g03186 206 SMART cbf3 109 170 IPR001289 GO:0003700|GO:0006355
Lapu3g03186 206 MobiDBLite consensus disorder prediction 129 147 - -
Lapu3g03186 206 MobiDBLite consensus disorder prediction 129 206 - -
Lapu3g03186 206 MobiDBLite consensus disorder prediction 166 181 - -
Lapu3g03186 206 MobiDBLite consensus disorder prediction 1 34 - -
Lapu3g03186 206 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 112 167 IPR001289 GO:0003700|GO:0006355
Lapu3g03186 206 Gene3D - 110 171 - -
Lapu3g03186 206 ProSiteProfiles NF-YA/HAP2 family profile. 110 170 IPR001289 GO:0003700|GO:0006355
Lapu3g03186 206 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 9 204 IPR001289 GO:0003700|GO:0006355
Lapu3g03186 206 MobiDBLite consensus disorder prediction 182 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03186 Lapu-Chr3 55191937 55197493 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03186 2 206 CCAAT-HAP2 Transcription Factor Family AT1G30500 57.971 1.96e-74 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lapu3g03186 CBFB_NFYA 3.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03186 K08064 - gmx:100499754 375.555