LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu3g03184	ATGAAAAGCAGGTCTCTTACAGGTAAAAGAAGAGTGAAGGATTTATTGCTTCAAAAAGATAATCGCTTTTGTGCTGATTGTAATGCTCCAGATCCTAAATGGGCATCAGCGAATATTGGAGTTTTTATATGCTTAAAATGCTGTGGTGTGCACAGAAGTCTTGGTTCTCATATATCAAAGGTTTTGTCTGTGACATTGGATGAATGGTCAAGTGATGAAATACATGCAATGGTTGATGTTGGAGGAAATTCTTCTGCTAATTCAATTTATGAGGCTTATATTCCACAAGGATTAACAAAGCCTGGACCAGATGCCAGTCATGAGCAGCGCGCAAAATTCATCCGGTTAAAGTATGAACAACAACAATTTTTGAAACCTAGTTTGCGCATTATGTCGGGCCCATCAAGTATTCCCCAAGGGATTAAGGATAATTTGCGAAATACTAGTGGTTCACAGAAGGCAGGAACGGCAGGATTTATTGGAAAGTTGAAGGTAAAAGTGATCAGAGGCACAGATTTAGCTATCAGGGATATGATGACCAGTGATCCTTATGTTATCTTCACTCTAGGCCAACAGACTGTTCAGACAACTGTAATAAAGAGTAATTTGAATCCAGTCTGGAATGAAGAACTTATGCTGTCTGTTACTCAGCAATTTGGATTATTGCATTTGGAGGTATTTGATTATGACTTATTTTCATCTGATGATATAATGGGGGAAGCAGACATTGATCTTCAACCCCTGATTACATCTGCAATGTCATATGGAGATGCTAGAATGTTTGATAATATGCAGATAGGGAAATGGATGAAATCCCATGACAATGCGCTTATAGATGATAGCACAGTCAATATTGTTGATGGTAAGGTTAAACAGGAGATATCAATCAAGCTCCAGAACGTTGAATCTGGAGAATTAGAACTAGCACTTGAGTGGATACCTCTTGAATCTTGA	954	0.3826	MKSRSLTGKRRVKDLLLQKDNRFCADCNAPDPKWASANIGVFICLKCCGVHRSLGSHISKVLSVTLDEWSSDEIHAMVDVGGNSSANSIYEAYIPQGLTKPGPDASHEQRAKFIRLKYEQQQFLKPSLRIMSGPSSIPQGIKDNLRNTSGSQKAGTAGFIGKLKVKVIRGTDLAIRDMMTSDPYVIFTLGQQTVQTTVIKSNLNPVWNEELMLSVTQQFGLLHLEVFDYDLFSSDDIMGEADIDLQPLITSAMSYGDARMFDNMQIGKWMKSHDNALIDDSTVNIVDGKVKQEISIKLQNVESGELELALEWIPLES*	318

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu3g03184	317	CDD	ArfGap	12	118	-	-
	Lapu3g03184	317	Pfam	Putative GTPase activating protein for Arf	10	125	IPR001164	GO:0005096
	Lapu3g03184	317	Pfam	C2 domain	161	252	IPR000008	-
	Lapu3g03184	317	FunFam	ADP-ribosylation factor GTPase-activating protein AGD12	159	317	-	-
	Lapu3g03184	317	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12	7	316	IPR044518	GO:0005096\|GO:0005543
	Lapu3g03184	317	SMART	C2_3c	162	257	IPR000008	-
	Lapu3g03184	317	Gene3D	C2 domain	160	317	IPR035892	-
	Lapu3g03184	317	SMART	arf_gap_3	11	131	IPR001164	GO:0005096
	Lapu3g03184	317	PRINTS	HIV Rev interacting protein signature	40	57	IPR001164	GO:0005096
	Lapu3g03184	317	PRINTS	HIV Rev interacting protein signature	61	82	IPR001164	GO:0005096
	Lapu3g03184	317	PRINTS	HIV Rev interacting protein signature	21	40	IPR001164	GO:0005096
	Lapu3g03184	317	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	9	123	IPR001164	GO:0005096
	Lapu3g03184	317	SUPERFAMILY	C2 domain (Calcium/lipid-binding domain, CaLB)	161	305	IPR035892	-
	Lapu3g03184	317	SUPERFAMILY	ArfGap/RecO-like zinc finger	9	126	IPR037278	-
	Lapu3g03184	317	CDD	C2_ArfGAP	160	304	-	-
	Lapu3g03184	317	Gene3D	Arf GTPase activating protein	1	129	IPR038508	-
	Lapu3g03184	317	ProSiteProfiles	C2 domain profile.	141	258	IPR000008	-
	Lapu3g03184	317	FunFam	stromal membrane-associated protein 1 isoform X1	1	129	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu3g03184	Lapu-Chr3	55174920	55178433	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu3g03184	7	316	C2H2 Transcription Factor Family	AT4G21160	69.136	2.34e-172	479

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu3g03184	K12486		-	gmx:100777084	526.939