Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03162 ATGCCTCGCAAAGTCAATTATGGACTCGATTACGACGACAACTATTACTACGATGATGATTATGACGACTATGGTTATGATGATGTCGATGCAGAAGACCATGGAGGACCACCTGATACAAAGCAAGAGACCATTAGGCCTGGGCTTTGGCAATGCTCCATCTGCACTTATGACAATGATGAGAGTATGACATTTTGTGATATATGTGGTGTTGTACGTCGGCCCTTGCCTAACATTGGAACTTCCAACAGTAGCAAAACAGCTGAAGACATAAGCAAAATTCCTGGAGCATCCAAGTTGGCCAGGTCTCTTTTTCAATCATTACCAGAAAAGATTCCCAAAGAGGTTGTATTATTTCCAAAGCCGGGTGATGGTTTTCTGACAGAGGGCAGTATCTTCTACAAGCTTGAAAATGTCCGGGGAGAATTTCATGAAATTCATAAGGATTTTAGTACTCCGAGCCATCCACACTTAAACATAGATCCTTTCAAGTTTGATGTTCCATCCCCTGATGATGTCGTTTATACTGGTCTACGTTCTTCCAAAATGGGATTGAAAGGCAAAGTTAGAAACAATAAAAGTTCGCAACTTTCGTCAAGCATCAGAGAGAAGAATGAACTTTCTGTACAATCAAATGCTGAAAGTTCAGACAACTTATCATCTTTAGCGAAAAAGAGCAGGCAGGATAGTTCAGCAGAGAGCAAGCTTTCAAAACATGTAGCGACTCATCCAGAAACAAGTGGTAAAACTTCAAACAGCTTGCCAGAATCTCTGCGAAAAGGCAAAGGTGAAAATAGTAATAAAATAAATTCTTTGAAGAATGGTACAATTGATATTCAATCAAGCAAAGAGAAGTCGGGTAGTTTGTCTGCACTGTCAAAAGTCAAGGAAAGTGATGACAATAGTTTCTCTTCTATCAAAGATGGAAAACCGGAAAGTATTTCCAGCAGTTTCAACAACATGGCTGTTGATGTAAGATTTAGAAATTCAGACAATACTAATGCCAAGAAACCTCGTTCACATGTTTCTTATAAGCCAGACAAATGGATGCTACCTCAACAAGCTGAAGATTCACTGACTCAGCTGAATCTTGCAATTGTTGGCCATGTTGATTCTGGAAAATCAACCCTATCTGGTAGGTTACTGCACCTATTGGGACGGATTTCCCAGAAAGAGATGCACAAATATGAAAAGGAGGCCAAGTTACAGGGCAAGGGATCTTTTGCTTATGCTTGGGCACTCGATGAAAGCTCTGAAGAAAGAGAAAGGGGAATAACTATGACAGTTGCTGTTGCTTATTTTGACACCAAGAGATATCATGTTGTTTTGCTCGACTCTCCAGGCCATAAAGATTTTGTTCCAAACATGATTTCTGGAGCAACACAAGCTGATGCTGCAATTCTTGTTATAGATGCCTCGCTTGGTTCATTTGAAGCTGGTATGGATGGCAGCAAAGGGCAAACAAGGGAACATGCACAACTTATCAGAAGTTTTGGTGTTGACCGGGTCATAGTTGCTGTAAACAAGATGGATGCTGTTGCGTACTCCAGAGATCGATTTGATTTTATAAGGCAGCAGCTGGGAGTTTTTCTCCACTCTTGTGGTTTCAAAGATTCGTCTCTATCTTGGATTCCCCTGAGTGCCATGGAAAATCAAAATTTGGTGGCATCCCCTTCTGATACCCGTTTCAAAAACTGGTATGGTGGACCTTATCTGTTAGACGCGATTGACTCTCTCCAAGCTCCTACTAGAGAATTTTCAAAACCTCTACTAATGCCTGTGTGTGATGTCATCAAATCAACTATGCTTGGACAGGTATCTGCTTGTGGCAAACTGGAAGCAGGAGCTCTTCGGAGTGGATCAAAGGTCTTAGTTATGCCTTCAGCTGTAGTGGGAACAGTACGCTCATTGGAGCGTGACTCTAATGCCTGTACTGTTGCAAGAGCTGGAGATAATATAGCTGTAACATTGCAAGGTGTCGATGGAAATCAGGTGATGGCAGGAGATGTGCTATGCCATCCCGACTTTCCTGTTGCAGCTGCTAAGCATTTGGAGTTGAAAGTGCTAGTGTTGGATGGTGCTAGTCCAATATTAGTGGGCACACAGTTAGAGTTTCATATACACCATGCAAAGGAACCTGCTAGAGTTTCAAGAATATTGTCAGTACTTGATCCCAAGACTGGTAAGGTGACCAAAAAGTCGCCTCGCTGTCTCACTGCAAAGCAAAGTGCAGTAATTGAGGTGGTTTTGCATGAGTCGGTCTGTGTGGTAGAGTTCTCTAGTTGTAAAGCTCTTGGAAGGGTGTCTCTAAGATCCCAGGGAAGAACAATTGCTGTTGGAGTTGTGACAAGAATAATTGAGGACGAAGGTTAA 2373 0.4201 MPRKVNYGLDYDDNYYYDDDYDDYGYDDVDAEDHGGPPDTKQETIRPGLWQCSICTYDNDESMTFCDICGVVRRPLPNIGTSNSSKTAEDISKIPGASKLARSLFQSLPEKIPKEVVLFPKPGDGFLTEGSIFYKLENVRGEFHEIHKDFSTPSHPHLNIDPFKFDVPSPDDVVYTGLRSSKMGLKGKVRNNKSSQLSSSIREKNELSVQSNAESSDNLSSLAKKSRQDSSAESKLSKHVATHPETSGKTSNSLPESLRKGKGENSNKINSLKNGTIDIQSSKEKSGSLSALSKVKESDDNSFSSIKDGKPESISSSFNNMAVDVRFRNSDNTNAKKPRSHVSYKPDKWMLPQQAEDSLTQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKEMHKYEKEAKLQGKGSFAYAWALDESSEERERGITMTVAVAYFDTKRYHVVLLDSPGHKDFVPNMISGATQADAAILVIDASLGSFEAGMDGSKGQTREHAQLIRSFGVDRVIVAVNKMDAVAYSRDRFDFIRQQLGVFLHSCGFKDSSLSWIPLSAMENQNLVASPSDTRFKNWYGGPYLLDAIDSLQAPTREFSKPLLMPVCDVIKSTMLGQVSACGKLEAGALRSGSKVLVMPSAVVGTVRSLERDSNACTVARAGDNIAVTLQGVDGNQVMAGDVLCHPDFPVAAAKHLELKVLVLDGASPILVGTQLEFHIHHAKEPARVSRILSVLDPKTGKVTKKSPRCLTAKQSAVIEVVLHESVCVVEFSSCKALGRVSLRSQGRTIAVGVVTRIIEDEG* 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03162 790 Pfam Elongation factor Tu C-terminal domain 678 785 IPR004160 -
Lapu3g03162 790 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 682 786 IPR009001 -
Lapu3g03162 790 SUPERFAMILY Ran binding protein zinc finger-like 48 73 IPR036443 -
Lapu3g03162 790 FunFam elongation factor 1-alpha isoform X4 680 789 - -
Lapu3g03162 790 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 361 604 IPR027417 -
Lapu3g03162 790 MobiDBLite consensus disorder prediction 189 317 - -
Lapu3g03162 790 Gene3D Translation factors 587 676 - -
Lapu3g03162 790 PRINTS GTP-binding elongation factor signature 458 469 IPR000795 GO:0003924|GO:0005525
Lapu3g03162 790 PRINTS GTP-binding elongation factor signature 442 452 IPR000795 GO:0003924|GO:0005525
Lapu3g03162 790 PRINTS GTP-binding elongation factor signature 503 512 IPR000795 GO:0003924|GO:0005525
Lapu3g03162 790 PRINTS GTP-binding elongation factor signature 363 376 IPR000795 GO:0003924|GO:0005525
Lapu3g03162 790 PRINTS GTP-binding elongation factor signature 422 430 IPR000795 GO:0003924|GO:0005525
Lapu3g03162 790 ProSitePatterns Zinc finger RanBP2-type signature. 50 69 IPR001876 -
Lapu3g03162 790 MobiDBLite consensus disorder prediction 189 227 - -
Lapu3g03162 790 MobiDBLite consensus disorder prediction 243 299 - -
Lapu3g03162 790 CDD HBS1-like_II 589 673 - -
Lapu3g03162 790 Gene3D Translation factors 680 789 - -
Lapu3g03162 790 ProSiteProfiles Zinc finger RanBP2 type profile. 46 75 IPR001876 -
Lapu3g03162 790 PANTHER TRANSLATION FACTOR 357 785 - -
Lapu3g03162 790 Pfam Elongation factor Tu domain 2 610 672 IPR004161 GO:0005525
Lapu3g03162 790 Gene3D - 350 584 IPR027417 -
Lapu3g03162 790 FunFam Elongation factor 1 alpha-like protein 352 583 - -
Lapu3g03162 790 FunFam Translation elongation factor EF-1 586 676 - -
Lapu3g03162 790 Pfam Elongation factor Tu GTP binding domain 362 577 IPR000795 GO:0003924|GO:0005525
Lapu3g03162 790 CDD HBS1_C_III 677 785 - -
Lapu3g03162 790 MobiDBLite consensus disorder prediction 228 242 - -
Lapu3g03162 790 CDD EF1_alpha 363 582 - -
Lapu3g03162 790 SMART zf_4 48 72 IPR001876 -
Lapu3g03162 790 SUPERFAMILY Translation proteins 582 676 IPR009000 -
Lapu3g03162 790 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 359 583 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03162 Lapu-Chr3 54981166 54991688 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03162 159 788 Eukaryotic Initiation Factors Gene Family AT5G10630 60.794 0.0 765
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03162 K14416 - gmx:100801724 1372.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01462 6 14437128 14440157 Lapu3g03162 3 54981166 54991688 PCT