Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03161 ATGGGAATTCAGGGGTTTTTGCCGCTATTGAAATCGATTATGGTTCCCATCAATATCAAGGACTTGAAGGGTTGTTCTGTAGCGGTAGACACCTATTCTTGGCTCCATAAAGGTGCCCTTTCTTGCAGCACCGAGCTCTGCAAAGGGATACCCACAACCAGGCACATTGAGTATTGCATGCACAGAGTCAATTTGCTGCGCCATTACGGCGTTAAGCCCATTCTAGTGTTTGATGGCGGGCTTCTGCCAATGAAGAGTGAACAAGAGATAAAGCGTGCCAGGGTTAGAAAGGACAATTTTGCACGTGCCGTTGAACACGAGTCAGATGGAAATTCAGCTGCTGCTTATGAGTGCTACCAGAAAGCAGTTGATATTTCCCCCCAAGTTGCATGTGAACTAATTCAGGTATTGAAGAAGGAGAATGTGCAGTATATTGTTGCTCCTTACGAGGCAGATGCCCAGATGACATTCTTGGCAATTAGTGGACAAGTTGATGTAGTTATAACTGAAGATTCTGATCTTATACCATTTGGCTGCCCGAGAATTCTCTTTAAAATGGACAAGTTTGGTCAAGGTGTTCAGTTCCAGTACTCCATGCTACAAAAGAATAAGGAGCTTAGTTTTGAAGGGTTCAACAGACAAATGGTTCTTGAAATGTGTATTTTGAGTGGCTGTGACTATCTTCAGTCCTTGCCAGGTATGGGTCTTAAAAGAGCCCATGCAAGCATAAAAAAATTTGGAAGTTATGACAAGGTTCTTAAGCACTTGAGATATAGTGGAGTTTCTGTGCCTCCCTTTTATGAAGAGTCATTCAAGAAGGCTATACATACTTTCCAATATCAACGGGTTTACGATCCAATTAATGAAAATATTGTTCATTTGTCTAATATACCTGATGATATTGGTGACGAGTTAGACTTTTTAGGCCCACCCATGTCAAAAGATATAGCTCAAAGAATAGCAAAAGGGGATCTTGATCCAATTACCAAAATGCCATTTGAGGGAGAGACTCTTACAGCCAGATTGGCAATTGCTGGAACTAGTCAGTTCAATACTCCTTCTGAAAGTGCAAAGAAAAAGATTGATTTGCCTGTGCAGAAGAATCTCTTGACCAAGTATTTTTGTGTTGCTTCTCTTGAAGCAAAAAGGAAATTCAGAGCACCTCGGGTGTCACCTACTGCTGCTAAAGAAACAAAGAACTGTACTGCATCAATCATCGAATCTGAGAATTTGGGCAGTGCCTGTCATCCTAATAGCCACATTGAATATGATTCTGCCACAAAAATTTCTGAATTTACTGACTCTCCATATCATGTTTCTATAGTGGGTGAGGAGAAGAAAAGCCCTGAACATGCAGTACTGCAACAGCCCAGGCAGCCAATTCATAAACCATGCTTGGGATTGCACAAGGAGCATGAGCACACTAATGTCCAATATACAGTAGAAGAAAAAACCAGGGAGGCAACTAGAAAGGTTATTGTAAGGAGTGCTTATTTTCAGCACAAGCAAGTGAAAAAGAATGTTTGTGACGAGAAACAAGACTACCAGTCCTCTGGCATAGTCATTGATGAGAGAAAAAATGCCGTATCTGACAGTGATTTATGTTATAACCATTTGAAGAATAAAGACCGGGAATTCCATGGCATAGTTGAAGGAAAAACCAGGGAGACAATAAGCAAGGTAATTGTAAGGAGTGCTTACTTTCAGAACAAGCAAGTGGAAAAGAATGTTTGTGACGAGAAACGAGAGTACCAGGCCTCTGGCATTGTCATTGATGATGGGAGAAAAGATGCCATATCTGACAGTGATTTATGTAATAACCATTTGAAGAGTAAAGACCAGGGATTCCATGACAAAGTTGAAGGAAAAACCAGGGAGACAACAAATAAGGTAATTGTAAGGAGTGCTTACTTTCAGCACAAGCAAGTAGAAAAGAATGCTTGTGATGAAAAACAAGATTACCTGTCCCATGGCATATTCATTGACAACAGAAGTGCCATATCTGACGGTGATTTATGTAACAACCATTTGAAGAATAAAGACCTGAAAAGGAAGATATCGCCTAATGATAATATAAAAAATGAAAATTTGCATCCTGGGCAAATGCACCGTGCTTCACCTCCTCATATTAATGGTTGCTGTGATCACAATGTTGAAGGACCATTTACGGAGAATAATGGTGAAGAAGAAAAATTCGGGACAAACATTTCCCATCTGGGTCAATATTCAGAAATAGCTGAGAAGTCTATGGAAAGATTTGTCTCTGTGATATCATCCTTTAGATGCACTTCTGGCACTCGTGTCAGTGGTCTCCGTGCTCCGCTGAAAAATGTTCGAAACACTTCTGATAACAGGCCAAAAACTGTGGACTTTGGACAATATGCATATGTGCCAAAGCAAACAAAGACTAGAAGAATAGCTCCTGGAAATTAA 2433 0.4048 MGIQGFLPLLKSIMVPINIKDLKGCSVAVDTYSWLHKGALSCSTELCKGIPTTRHIEYCMHRVNLLRHYGVKPILVFDGGLLPMKSEQEIKRARVRKDNFARAVEHESDGNSAAAYECYQKAVDISPQVACELIQVLKKENVQYIVAPYEADAQMTFLAISGQVDVVITEDSDLIPFGCPRILFKMDKFGQGVQFQYSMLQKNKELSFEGFNRQMVLEMCILSGCDYLQSLPGMGLKRAHASIKKFGSYDKVLKHLRYSGVSVPPFYEESFKKAIHTFQYQRVYDPINENIVHLSNIPDDIGDELDFLGPPMSKDIAQRIAKGDLDPITKMPFEGETLTARLAIAGTSQFNTPSESAKKKIDLPVQKNLLTKYFCVASLEAKRKFRAPRVSPTAAKETKNCTASIIESENLGSACHPNSHIEYDSATKISEFTDSPYHVSIVGEEKKSPEHAVLQQPRQPIHKPCLGLHKEHEHTNVQYTVEEKTREATRKVIVRSAYFQHKQVKKNVCDEKQDYQSSGIVIDERKNAVSDSDLCYNHLKNKDREFHGIVEGKTRETISKVIVRSAYFQNKQVEKNVCDEKREYQASGIVIDDGRKDAISDSDLCNNHLKSKDQGFHDKVEGKTRETTNKVIVRSAYFQHKQVEKNACDEKQDYLSHGIFIDNRSAISDGDLCNNHLKNKDLKRKISPNDNIKNENLHPGQMHRASPPHINGCCDHNVEGPFTENNGEEEKFGTNISHLGQYSEIAEKSMERFVSVISSFRCTSGTRVSGLRAPLKNVRNTSDNRPKTVDFGQYAYVPKQTKTRRIAPGN* 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03161 810 CDD H3TH_EXO1 214 285 IPR037315 GO:0003677|GO:0035312
Lapu3g03161 810 SUPERFAMILY PIN domain-like 2 226 IPR029060 -
Lapu3g03161 810 SMART HhH_4 213 246 IPR008918 GO:0003677|GO:0003824
Lapu3g03161 810 CDD PIN_EXO1 1 202 IPR044752 GO:0046872
Lapu3g03161 810 ProSitePatterns XPG protein signature 1. 71 85 IPR019974 GO:0016788
Lapu3g03161 810 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 398 IPR006084 -
Lapu3g03161 810 SMART xpgineu 138 208 IPR006086 GO:0004518
Lapu3g03161 810 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 137 154 IPR006084 -
Lapu3g03161 810 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 73 92 IPR006084 -
Lapu3g03161 810 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Lapu3g03161 810 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 216 231 IPR006084 -
Lapu3g03161 810 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 158 178 IPR006084 -
Lapu3g03161 810 Gene3D - 1 207 - -
Lapu3g03161 810 SMART xpgn3 1 99 IPR006085 GO:0004518
Lapu3g03161 810 Pfam XPG N-terminal domain 1 98 IPR006085 GO:0004518
Lapu3g03161 810 Pfam XPG I-region 141 226 IPR006086 GO:0004518
Lapu3g03161 810 FunFam Exonuclease 1, putative 1 207 - -
Lapu3g03161 810 Gene3D - 209 281 - -
Lapu3g03161 810 FunFam exonuclease 1 209 281 - -
Lapu3g03161 810 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 211 334 IPR036279 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03161 Lapu-Chr3 54969325 54978297 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03161 1 264 Core DNA Replication Machinery Family AT5G26680 27.798 4.26e-20 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03161 K10746 - gmx:100798062 1193.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03161 3 54969325 54978297 Lapu3g03161 3 54969325 54978297 ECH