LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu3g03155	ATGGCTTTTCCAAACCAATCCATGTCATCAGTTTCTCCCGAGAGAAAGATGGGAAGGGGGAAGATTGAGATCAAGAGGATTGAGAACACGACCAGTCGACAAGTTACCTTCTGCAAGCGCAGAAATGGCTTGCTCAAGAAGGCATATGAGTTATCTGTGCTTTGTGATGCAGAGGTTGCTCTAATAGTCTTTTCCAACCGCGGCCGCCTCTATGAATATGCCAATAACAGTGTCAAAGCTTCAATTGAGAGATACAAGAAAGCAAGCTCAGATTCATCTAGTGGTGGATCTGCTTCTGAGGCTAATGCTCAGTTTTACCAGCAAGAAGCTGCCAAACTGCGAGTTCAGATCAGCAATCTGCAGAATCACAATAGGCAAATGATGGGTGAAGCTTTAAGCAATATGAATGCCAAGGATCTCAAAAACCTAGAGAGTAAATTAGAAAAAGGAATTAGTAGAATTCGTTCCAAGAAGAATGAGCTGCTATTTGCTGAAATTGAGTACATGCAGAAGAGGGAGACAGATCTGCACAACAACAACCAGCTTCTTAGAGCAAAGATGGCAGAAAGGGAAAGGAGTGATCATAATGTTAACTTGTTGTCTGCAAGCACGAGCTACGAATCAATGCAATCTCAGTTTGATTCTCGTGGCTTCTTCCAAGTCACTGGATTACAACCTAATAATAATCAGTATGCTGGACAAGACCACATGTCCCTCCAATTTGTGTAA	729	0.4239	MAFPNQSMSSVSPERKMGRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYANNSVKASIERYKKASSDSSSGGSASEANAQFYQQEAAKLRVQISNLQNHNRQMMGEALSNMNAKDLKNLESKLEKGISRIRSKKNELLFAEIEYMQKRETDLHNNNQLLRAKMAERERSDHNVNLLSASTSYESMQSQFDSRGFFQVTGLQPNNNQYAGQDHMSLQFV*	243

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu3g03155	242	CDD	MADS_MEF2_like	18	87	IPR033896	GO:0000977\|GO:0045944
	Lapu3g03155	242	ProSiteProfiles	MADS-box domain profile.	17	77	IPR002100	GO:0003677\|GO:0046983
	Lapu3g03155	242	MobiDBLite	consensus disorder prediction	1	20	-	-
	Lapu3g03155	242	ProSitePatterns	MADS-box domain signature.	19	73	IPR002100	GO:0003677\|GO:0046983
	Lapu3g03155	242	Pfam	K-box region	100	187	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Lapu3g03155	242	Coils	Coil	140	160	-	-
	Lapu3g03155	242	Coils	Coil	103	130	-	-
	Lapu3g03155	242	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	26	73	IPR002100	GO:0003677\|GO:0046983
	Lapu3g03155	242	Gene3D	-	29	96	IPR036879	GO:0003677\|GO:0046983
	Lapu3g03155	242	FunFam	agamous-like MADS-box protein AGL11	29	112	-	-
	Lapu3g03155	242	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	17	195	-	-
	Lapu3g03155	242	ProSiteProfiles	K-box domain profile.	103	193	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Lapu3g03155	242	SMART	madsneu2	17	76	IPR002100	GO:0003677\|GO:0046983
	Lapu3g03155	242	SUPERFAMILY	SRF-like	18	90	IPR036879	GO:0003677\|GO:0046983
	Lapu3g03155	242	PRINTS	MADS domain signature	39	54	IPR002100	GO:0003677\|GO:0046983
	Lapu3g03155	242	PRINTS	MADS domain signature	19	39	IPR002100	GO:0003677\|GO:0046983
	Lapu3g03155	242	PRINTS	MADS domain signature	54	75	IPR002100	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu3g03155	Lapu-Chr3	54910366	54915346	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu3g03155	15	242	MADS-box Gene Family	AT3G58780	63.559	4.22e-102	295

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Lapu3g03155		K-box	2.6e-27	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu3g03155	K09264		-	gmx:100776263	409.838

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lapu3g03155	3	54910366	54915346	Lapu3g03155	3	54910366	54915346	ECH
	Lapu3g03155	3	54910366	54915346	Lapu6g01403	6	13847834	13856829	PCT