Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03149 ATGCTACCTAGGACACTCTTTGCTTTCGTACTCTTTGCTCTGAGTTGTTTCAGATGGCTAGAATATGCAGAATGCAAAGTAGCGCAAGAGGAGGTTGATGCTCTTAAGGAAATCACTAGAACGATGGGGGCCACCTATTGGGAGTTTGATAGCGATCATTGTAAGATTAAAAGGCTGGGATCAACCCCAGATCCACCTAAAGAATCTGAAAGGAGCATTACGTGTGTTTGCTTCTTTGAAAATAACACCTGTCATGTAGAAAAGATCGTGTTCAAGTGGATGAACCTTCCTGGGATGCTTCCACCTCAATTGGTTAACCTTCCTTACCTCAGAGAAGTTGATTTTGCTCTCAATTACCTGAGTGGTAGGATTCCGAAGGAATGGAGTCAAATAAACTTAACCAATATTTCTGTATATGCTAATCATTTGTCAGGGGAAATTCCTATAGAGTTGGGAAAGATTACCACTCTAGAATACCTGAACCTTGAAGCAAACCAATTTTCTGGTGTTATTCCCCATGAACTTGGAAATCTACGTAACCTGAAGATATTGATTTTATCGTCCAATAAATTGTCTGGGGAGTTACCGGTGACACTTGCTAAGCTGCAGAATTTGACACAGCTCAGGATAAGTGATAACAATTTTAACGGAGAAATACCTAGCTTCATACAGAATTGGAAATCACTTCAAAGATTAGACATGATTGCAAGTGGACTGGAGGGACCTATCCCATCAAATATATCTCTTTTGAGTAATTTAAATCAATTGAGGATTAGTGATATAAGTGGTCCAAGTCAGGATTTTCCTAATTTAAGCAATATGGCAGTATTGGAGACACTGATTTTGAGAAACTGCCATATTACTGGAGAGCTTCCAAGCTACTTGTGGAGTATGCACACGTTAACAATGTTGGACGTGAGTTTCAATAAGTTGGTTGGGAAAATACCAGCAGGTCGACATGCAGGGCATATGAGATTTCTCTTTCTAACACACAACATGCTAAGTGGTAACATTCCCGAATCAGTCTTGAAGGATGGAAGCTGCGTTGACCTTTCATACAACAATTTTACGTGGCAAGGACTAGATCAGCCTGCTTGCAGAGATGACCTAAATTTAAACATAAACTTGTTTTGGAGCTTCTTCGGGACCAAATTACGGCAGATTCTTCCATGTTCAAAGATCTCCAGTTGTCCTGCATATTCACATTGTTTTCATGTTAATTGTGGTGGAAAGGATGTAAAGGCGATGGAAAATGATGAAAATGTTCTCTATGTAGGAGATGGAGATGTGTTAGGCAGTGATGCTGCTAATTATTTTATCGATAATAAAAGTCACTGGGGATTTAGCAGCACTGGGGACTTCACGGATGATGGCGATTACCTAAATACTCATTTTACTAGGGCTTTGCCATCTTCAAATTTGCCTGAAATATATAAAACGGCTCGTGTCACTCCAATTTCGCTTACTTATTTTCTCTATTGCTTGGAAAATGGGAAATATACTGTAAAACTCCACTTCGCAGAAATACAATTTACAAACGATAAGACATATAGCAGTCTTGGGAAGCGCTTATTTGATATTTATATTCAGGAAAAATTAGTTAGGAAGGATTTTAATATTGAAGATGAAAGTCACGGTGCTCAAAAACCACTTACATTCCCATATAATGTCAGTGTAACAGACAATACTCTGGAGATTCGATTCTATTGGGCTGGAAAGGGGACTACAAGGATTCCTGCTGGTGGAGCTTACGGTCCCCTCATATCAGCTGTCTCCATTGTTTCTCATTCCAAACCATGTTCAGAACAAAAAAGTGCAAGGCCGAAGATAATTGTTGGGGTTGGGTTTGGTGTTACAGCTCTGTGCCTTGTCTTTATCATAGTTGGAATCTTTTGGTGGAAGGGCTGCTTTAGACGAATAATTAGGAGAATAAAAGGTAGTGAAAGACCAGATTCTCAGATGGGGACATTTACATTAGAACAAATTAGAGAGGCCACAGAGGATTTCAGTCAAGATAACAAGATTGGAGAAGGTGGTTTTGGTCCTGTCTACAAGGGTCAATTATCTGATGGTACACTGGTAGCAGTCAAACAACTCTCATCAAAGTCACGGCAGGGAAATCGTGAATTTTTAAACGAGATAGGCTTGATATCTTGTTTGCAACACCCTAATCTTGTCAAACTTTATGGATGTTGCATTGAAGGGAATCAATTAATGTTGGTGTATGAGTACATGGAAAATAATAGCCTGGCTCAGGCAATATTCAGCTCAAAAGATCAACTTAAACTTGACTGGCCAACAAGGCTTAGGATCTGTATTGGCATAGCAAAAGGTCTTGCATTTCTTCATGAAGAATCAAGACTCAAGATTGTTCATCGAGACATCAAGGCTACTAATGTGTTACTGGATGGGAATTTAAACCCCAAAATATCTGACTTTGGGTTGGCTAGGCTAGATGAAGAAGAGAAGACCCATATCACCACCCGAATAGCTGGGACAATAGGGTACATGGCACCGGAATATGCATTATGGGGTCACTTGTCTTACAAGGCTGATGTTTACAGTTATGGGGTTGTGGTCTTGGAAGTTGTTAGTGGGAAGAGAAATCAGAATTACATGCCTAGTGATAATCGTGTTTGCCTTTTAGACAAGGCATGTCATCTACAGCGTACTGAAAACTTAATAGAACTGGTGGATGAAAGGTTGGAATCAGAGGTAAAACCAACTGAAGCAATAATTTTGATGAAAGTAGCTCTTCTGTGCACCGATGTATCACCTTCACTTAGGCCAACAATGTCTGAGGTTGTAAACATGCTCGAAGGAAGAGCAAGCATTCCAGAAGCTATCCCACAGCCAAGTGATTTCAGTGAAGATTTAAGGTTTAAATCCATGAGGGATATCTATCAACAAATGGAAAATCACAGTTTGAGTTCAAGCCAAAGAGACACTTCAACTGGAGTCCTTACACTTAACTCACCTTCAACATTTGGCAAATGA 2997 0.3981 MLPRTLFAFVLFALSCFRWLEYAECKVAQEEVDALKEITRTMGATYWEFDSDHCKIKRLGSTPDPPKESERSITCVCFFENNTCHVEKIVFKWMNLPGMLPPQLVNLPYLREVDFALNYLSGRIPKEWSQINLTNISVYANHLSGEIPIELGKITTLEYLNLEANQFSGVIPHELGNLRNLKILILSSNKLSGELPVTLAKLQNLTQLRISDNNFNGEIPSFIQNWKSLQRLDMIASGLEGPIPSNISLLSNLNQLRISDISGPSQDFPNLSNMAVLETLILRNCHITGELPSYLWSMHTLTMLDVSFNKLVGKIPAGRHAGHMRFLFLTHNMLSGNIPESVLKDGSCVDLSYNNFTWQGLDQPACRDDLNLNINLFWSFFGTKLRQILPCSKISSCPAYSHCFHVNCGGKDVKAMENDENVLYVGDGDVLGSDAANYFIDNKSHWGFSSTGDFTDDGDYLNTHFTRALPSSNLPEIYKTARVTPISLTYFLYCLENGKYTVKLHFAEIQFTNDKTYSSLGKRLFDIYIQEKLVRKDFNIEDESHGAQKPLTFPYNVSVTDNTLEIRFYWAGKGTTRIPAGGAYGPLISAVSIVSHSKPCSEQKSARPKIIVGVGFGVTALCLVFIIVGIFWWKGCFRRIIRRIKGSERPDSQMGTFTLEQIREATEDFSQDNKIGEGGFGPVYKGQLSDGTLVAVKQLSSKSRQGNREFLNEIGLISCLQHPNLVKLYGCCIEGNQLMLVYEYMENNSLAQAIFSSKDQLKLDWPTRLRICIGIAKGLAFLHEESRLKIVHRDIKATNVLLDGNLNPKISDFGLARLDEEEKTHITTRIAGTIGYMAPEYALWGHLSYKADVYSYGVVVLEVVSGKRNQNYMPSDNRVCLLDKACHLQRTENLIELVDERLESEVKPTEAIILMKVALLCTDVSPSLRPTMSEVVNMLEGRASIPEAIPQPSDFSEDLRFKSMRDIYQQMENHSLSSSQRDTSTGVLTLNSPSTFGK* 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03149 998 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 10 976 - -
Lapu3g03149 998 ProSitePatterns Serine/Threonine protein kinases active-site signature. 790 802 IPR008271 GO:0004672|GO:0006468
Lapu3g03149 998 SUPERFAMILY Protein kinase-like (PK-like) 652 940 IPR011009 -
Lapu3g03149 998 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 639 744 - -
Lapu3g03149 998 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 401 596 - -
Lapu3g03149 998 Gene3D Transferase(Phosphotransferase) domain 1 745 949 - -
Lapu3g03149 998 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Lapu3g03149 998 Gene3D Ribonuclease Inhibitor 195 261 IPR032675 -
Lapu3g03149 998 FunFam Putative LRR receptor-like serine/threonine-protein kinase 745 951 - -
Lapu3g03149 998 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 196 262 - -
Lapu3g03149 998 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 264 384 - -
Lapu3g03149 998 Gene3D Ribonuclease Inhibitor 31 194 IPR032675 -
Lapu3g03149 998 MobiDBLite consensus disorder prediction 973 998 - -
Lapu3g03149 998 Gene3D - 401 598 - -
Lapu3g03149 998 Gene3D Phosphorylase Kinase; domain 1 639 744 - -
Lapu3g03149 998 SMART serkin_6 669 939 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g03149 998 Pfam Protein tyrosine and serine/threonine kinase 671 939 IPR001245 GO:0004672|GO:0006468
Lapu3g03149 998 Pfam Malectin domain 403 591 IPR021720 -
Lapu3g03149 998 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 33 195 - -
Lapu3g03149 998 ProSiteProfiles Protein kinase domain profile. 669 945 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g03149 998 Gene3D Ribonuclease Inhibitor 262 363 IPR032675 -
Lapu3g03149 998 CDD STKc_IRAK 675 941 - -
Lapu3g03149 998 Pfam Leucine rich repeat 156 215 IPR001611 GO:0005515
Lapu3g03149 998 SUPERFAMILY L domain-like 76 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03149 Lapu-Chr3 54853708 54870125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03149 6 834 Receptor kinase-like Gene Family AT1G29750 58.894 0.0 991
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lapu3g03149 PK_Tyr_Ser-Thr 4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03149 - - mtr:11406167 1403.27