Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03146 ATGGGTGAGAACTCAACAACAAACCATGAGGTGGTCTTAGATGTAAACAAGGATGTCTCTAGCACAACTCAAGCCTCACGCTCCTGTCTCAATGTTTCTTTCTTGCAAAAGTTGGTAGCTGAGGTGGTGGGCACGTATTTCTTGATATTCGCAGGGTGTGCTTCAGTGATCGTGAACAAGAACAACGACAACGTGGTAACACTTCCTGGGATATCAATTGTCTGGGGACTAGTTGTGACGGTGCTGGTTTACTCTGTTGGTCATATCTCTGGTGCCCATTTCAATCCTGCTGTCACCATTGCTTTTGCCTCCACCAAAAGGTTTCCCTGGAAGCAGGTACCAGCTTATGTAGTTGCTCAGGTTGTTGGATCCACACTTGCCAGTGGGACTCTCAGACTAATATTTAGTGGCAATGAGAACCAGTTTGCAGGAACACTTCCATCTGGCACTCACGCACAAGCTTTCGCCGTTGAATTCATAATAACATTTTTTCTTATGTTTGTCATATCTGGGGTTGCTACTGATAACAGAGCGATCGGTGAGTTGGCTGGAATTGCCGTTGGGGCTACTGTGCTATTGAATGTGTTGATTGCAGGACCAATCACAGGAGCATCAATGAACCCAGCAAGAAGCTTAGGCCCTGCCTTTGTGCACGATGAATTCAGAGGAATATGGATATATTTAGTGTCTCCAACATCTGGGGCTGTGACTGGTGCATGGGTGTATAACAGTATTCGTTACACAGATAAGCCACTGCGTGAGATCACCCAAAGTGCTTCTTTCCTTAAAGGGAACAGGTCTTGA 804 0.459 MGENSTTNHEVVLDVNKDVSSTTQASRSCLNVSFLQKLVAEVVGTYFLIFAGCASVIVNKNNDNVVTLPGISIVWGLVVTVLVYSVGHISGAHFNPAVTIAFASTKRFPWKQVPAYVVAQVVGSTLASGTLRLIFSGNENQFAGTLPSGTHAQAFAVEFIITFFLMFVISGVATDNRAIGELAGIAVGATVLLNVLIAGPITGASMNPARSLGPAFVHDEFRGIWIYLVSPTSGAVTGAWVYNSIRYTDKPLREITQSASFLKGNRS* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03146 267 Gene3D Glycerol uptake facilitator protein. 2 258 IPR023271 -
Lapu3g03146 267 SUPERFAMILY Aquaporin-like 30 256 IPR023271 -
Lapu3g03146 267 CDD MIP 36 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu3g03146 267 PRINTS Major intrinsic protein family signature 75 99 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu3g03146 267 PRINTS Major intrinsic protein family signature 36 55 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu3g03146 267 PRINTS Major intrinsic protein family signature 157 175 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu3g03146 267 PRINTS Major intrinsic protein family signature 188 210 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu3g03146 267 PRINTS Major intrinsic protein family signature 225 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu3g03146 267 PRINTS Major intrinsic protein family signature 112 131 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu3g03146 267 ProSitePatterns MIP family signature. 93 101 IPR022357 -
Lapu3g03146 267 PANTHER AQUAPORIN NIP2-1 20 262 IPR034294 -
Lapu3g03146 267 Pfam Major intrinsic protein 31 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu3g03146 267 NCBIfam MIP family channel protein 40 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03146 Lapu-Chr3 54831557 54833503 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03146 23 263 Major Intrinsic Protein MIP AT5G37810 59.751 1.47e-104 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03146 K09874 - gmx:100798526 457.603