Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03145 ATGGCTGATTATTCAGGAGGATCTGAAACCCACGAGGTAGTTGTAAATGTAACCAAGGACATCCCCAAAACAATGGAACGCTCAGACTCCTTTGTCTCTGTTCCTTTCTTGCAGAAGTTGATAGCTGAGGTGGTGGGCACATATTTCTTGATATTCGCAGGATGTGGTTCAGTTGTGGTGAACAAGAACAACAACAACGTGGTAACACTTCCTGGGATAGCAATTGTTTGGGGGCTGGTTGTGACGGTGCTGGTTTACTCTGTTGGTCACATCTCTGGTGCCCATTTCAATCCTGCTGTCACCATTGCTTTTGCCTCCACTAAAAGGTTTCCCTTGGCGCAGGTACCAGCTTATGTGGCAGCTCAACTGCTAGGAAGCACACTTGCAAGTGGAACTCTGAAGCTATTGTTTATGGGGAAGCACGACCAGTTTTCAGGAACAGTTCCAAATGGAACTGACCTGCAAGCTTTTGTGTTTGAATTCATAATCACCTTTTTCCTTATGTTTGTCATATCAGGGGTTGCCACTGATAACAGAGCGATTGGTGAGTTGGCTGGGATTGCAATTGGGTCTACGATACTGCTGAACGTGATGATTGGAGGGCCAGTGACAGGAGCATCAATGAACCCAGTGAGAAGCCTTGGACCTGCTTTTGTGCACTCAGAATACAAAGGAATATGGATATACATTTTGGCACCAATTGTTGGAGCTGTGGTTGGAGCATGGGTCTACAATACCATTAGGTACACAGAGAAGCCACTGCGTGAGATCACCAAGAGTGCCTCTTTTCTCAAAGGGCGTGGCACCAAATAA 813 0.4625 MADYSGGSETHEVVVNVTKDIPKTMERSDSFVSVPFLQKLIAEVVGTYFLIFAGCGSVVVNKNNNNVVTLPGIAIVWGLVVTVLVYSVGHISGAHFNPAVTIAFASTKRFPLAQVPAYVAAQLLGSTLASGTLKLLFMGKHDQFSGTVPNGTDLQAFVFEFIITFFLMFVISGVATDNRAIGELAGIAIGSTILLNVMIGGPVTGASMNPVRSLGPAFVHSEYKGIWIYILAPIVGAVVGAWVYNTIRYTEKPLREITKSASFLKGRGTK* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03145 270 PRINTS Major intrinsic protein family signature 159 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu3g03145 270 PRINTS Major intrinsic protein family signature 190 212 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu3g03145 270 PRINTS Major intrinsic protein family signature 114 133 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu3g03145 270 PRINTS Major intrinsic protein family signature 227 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu3g03145 270 PRINTS Major intrinsic protein family signature 77 101 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu3g03145 270 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu3g03145 270 NCBIfam MIP family channel protein 42 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu3g03145 270 SUPERFAMILY Aquaporin-like 32 258 IPR023271 -
Lapu3g03145 270 Pfam Major intrinsic protein 32 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu3g03145 270 PANTHER AQUAPORIN NIP2-1 30 264 IPR034294 -
Lapu3g03145 270 Gene3D Glycerol uptake facilitator protein. 6 259 IPR023271 -
Lapu3g03145 270 ProSitePatterns MIP family signature. 95 103 IPR022357 -
Lapu3g03145 270 CDD MIP 38 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03145 Lapu-Chr3 54824080 54826206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03145 34 270 Major Intrinsic Protein MIP AT5G37820 61.603 5.71e-102 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03145 K09874 - gmx:100813448 470.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03145 3 54824080 54826206 Lapu3g03145 3 54824080 54826206 ECH
Lapu3g03145 3 54824080 54826206 Lapu6g01391 6 13700677 13703155 PCT