Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03144 ATGGATGAGGCACTGGGTAGTTCATGTTCCCTGCCCCCTTTCCTAGCAAAGACGTATGAGATGGTGGATGATCCTTCCACGAATTCAATTGTTTCGTGGAGTGCATCTAGCAAAAGTTTCATTGTGTGGAATCCTCCAGAATTTGCAAGGGATTTGCTGCCTAGATTCTTTAAGCACAACAACTTCTCAAGTTTTATCAGGCAGCTCAACACATATGGATTTAGAAAAATTGACCCGGAACAATGGGAATTTGCCAATGATGATTTTGTAAGAGGGCAACCTCATCTTATGAAGAATATTCATAGACGGAAGCCCGTTCATAGCCATTCTTTGCAGAATCTCCAAGCTCAGGGCCCGTTAGGGGAATCAGAAAGGCAGAGTTTTACTGATGAAATAGAGAAACTTAAACATGATAAAGAGCGACTTCTCGTGGAATTACAGAAATTTCAGCATGAGTGGCAGACATACGAGATACAAATACATTGCTCGAACGATAGGTTGGAAAAGTTGGAACAAAATCAACACAAGATGGTTTCTTCAGTTTCTCATGCATTGCAGAAACCTGTGATTGCTGTAAATATCTTGCCTCTGACAGAAACTATGGATAGAAAACGAAGGTTACCGAGAAGTGGCCACTATTATGATGAAGCTAGTATTGAAGATGCTATGGAAACTTCTCAAACTTTACCAAGAGAAAATGCTGAGAATACCACTGTCTTGACATTAAATGTGGAGCGATTGGATCAGCTTGAATCATCCATGGCATTTTGGGAGTCTATTGCACATGATATTGGCGACAACTTCGCTCAAATTCAGTCAAACATGGATTTGGATGAATCTACAAGTTGTGCTAATAGTCCATCTATATCTTGTGCGCAGTTAGATGTTGAAGTTCGACCTAAATCATCTGGAATTGACATGAACTCTGAGCCAACTGCAGCTGCTGTTCCTGATCCCGTTGCATCTAAAGAACAACCTGCAGGAATCACTGTCGCAGCTACTGGAGTTAATGATGTATTCTGGGAACAGTTCTTAACAGAGGATCCTGGTGCATCAGAAACACAGGAAGTGCAATCAGAAAGAAAGGATTGTGATGGCAGAAAGAACGAAGGAAAACCTATTGACCATAGCAAATTTTGGTGGAATATACGGAATGCAAATAATCTTCCAGAACCGATGGGGCATGTTGTTCAAGCAGAGAAAACTTAG 1209 0.4111 MDEALGSSCSLPPFLAKTYEMVDDPSTNSIVSWSASSKSFIVWNPPEFARDLLPRFFKHNNFSSFIRQLNTYGFRKIDPEQWEFANDDFVRGQPHLMKNIHRRKPVHSHSLQNLQAQGPLGESERQSFTDEIEKLKHDKERLLVELQKFQHEWQTYEIQIHCSNDRLEKLEQNQHKMVSSVSHALQKPVIAVNILPLTETMDRKRRLPRSGHYYDEASIEDAMETSQTLPRENAENTTVLTLNVERLDQLESSMAFWESIAHDIGDNFAQIQSNMDLDESTSCANSPSISCAQLDVEVRPKSSGIDMNSEPTAAAVPDPVASKEQPAGITVAATGVNDVFWEQFLTEDPGASETQEVQSERKDCDGRKNEGKPIDHSKFWWNIRNANNLPEPMGHVVQAEKT* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03144 402 MobiDBLite consensus disorder prediction 349 374 - -
Lapu3g03144 402 FunFam Heat shock transcription factor 1 7 104 - -
Lapu3g03144 402 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu3g03144 402 Gene3D - 7 104 IPR036388 -
Lapu3g03144 402 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu3g03144 402 MobiDBLite consensus disorder prediction 354 374 - -
Lapu3g03144 402 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu3g03144 402 SUPERFAMILY "Winged helix" DNA-binding domain 10 103 IPR036390 -
Lapu3g03144 402 Coils Coil 125 152 - -
Lapu3g03144 402 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu3g03144 402 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu3g03144 402 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu3g03144 402 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 7 232 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03144 Lapu-Chr3 54806259 54808963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03144 7 402 HSF AT4G18880 52.334 8.16e-123 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lapu3g03144 HSF_DNA-bind 1.2e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03144 K09419 - gmx:100798004 742.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03144 3 54806259 54808963 Lapu3g03144 3 54806259 54808963 ECH
Lapu6g01385 6 13632592 13634906 Lapu3g03144 3 54806259 54808963 ECH
Lapu3g03144 3 54806259 54808963 Lapu6g01385 6 13632592 13634906 PCT