Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03143 ATGAAGTGGGGTGGAAAAAAACCTTCTCCTTCTTCTTCTTCCTCTTCTAGGCCTTCTTTCATATCTCATGTGTCTCCTTTTTCATGGCTTTCCAAGTTCAAGCATATGAGAATAAACTCAGAGCCAAAACCTGGCGCACTGAAGCATAATGCAAAGCAGAATTCAACTCCATCTGATAGCTCACCCTATTATGCTTGTGGGAATAATAGAGGCAGATTTTATGGAGGGGATGATGAGGCTTTCTGGAGACTCTCATTTGGTGAAGAGGGTAATGAGCATAGAAAAAGTGATGATATTCTGAAGCCAGTAAAGTACAATTTGGATGCTGAACATGTCATTTCTTCCTCAAGTCTTCCCGGTGGATTGAACCATGCTAAAAGACAAGGTAGAAGAGAAGGCACTCAGAAGTTGAAGCAGAAGGATAATGGACTGAGAGAAGAAACAACATTGCTGAATGAAGCAGCAAGGAGTGTAAAGGAACTTGAATCCTTGAGGAGGAGATATGAGAGAAAAGCGCAAAGAGTTTTGCAAGAGCAGCTCTTGAAAATGGAAAAGGCAGAAGAGGAAGCTGAGTTTGCATCAAGTCCGTTCTTAGAAAATGATGTGCTGCAATATGAGTCACCGAGAACAATTTGCACACCTAGAAAGCATTTGTTTGCAGATTCCAAGAGTTCTGGCCTTGGAAATCTTAGAGAAGCTCGAGTGTGTAGTCCCCAATTAGATTCTGAGTGGCATAATTTGAAACAAACTGAGGAGTTGAAATTGAAAGCAAAGAGTAACCAACAAATGCAATCGCTTCATGTGAGCAGAGAAAACCAGAGGAGGAAAGCAAAGCACAACTCCAAGGTTAAAGTATATTCTCCAAGGATGGGTTCCAAGGTTGAAGTCCGAAAAATAAAGGCCATAGAAGAGAAGAAGAAAGCAAAACTGAAGATGAAGAAAGAAGAGGAAATTGTGGAGGAAACAGAAGGGTTAGATAGCTTTGCGGTGGTGAAATGTTCTTTGGATCCACAGAAAGATTTCAGAGACTCAATGATTGAGATGATCACAGAGAAACAGATCAGCCAGCCAGAAGAAATGCAAGATCTGCTAGCGTGTTATCTGACTTTGAATTCTAATGAGTACCATGATCTCATCATCCAAGTGTTCAAGCAAGTATGGTTGTGCATGAGCCAACCGAGTTCCGGTATCCAATCACACAAGCAATGCTGTTGTTGTGAT 1221 0.4136 MKWGGKKPSPSSSSSSRPSFISHVSPFSWLSKFKHMRINSEPKPGALKHNAKQNSTPSDSSPYYACGNNRGRFYGGDDEAFWRLSFGEEGNEHRKSDDILKPVKYNLDAEHVISSSSLPGGLNHAKRQGRREGTQKLKQKDNGLREETTLLNEAARSVKELESLRRRYERKAQRVLQEQLLKMEKAEEEAEFASSPFLENDVLQYESPRTICTPRKHLFADSKSSGLGNLREARVCSPQLDSEWHNLKQTEELKLKAKSNQQMQSLHVSRENQRRKAKHNSKVKVYSPRMGSKVEVRKIKAIEEKKKAKLKMKKEEEIVEETEGLDSFAVVKCSLDPQKDFRDSMIEMITEKQISQPEEMQDLLACYLTLNSNEYHDLIIQVFKQVWLCMSQPSSGIQSHKQCCCCD 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03143 407 MobiDBLite consensus disorder prediction 49 65 - -
Lapu3g03143 407 ProSiteProfiles OVATE domain profile. 330 389 IPR006458 -
Lapu3g03143 407 MobiDBLite consensus disorder prediction 40 68 - -
Lapu3g03143 407 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 195 391 IPR038933 GO:0045892
Lapu3g03143 407 Coils Coil 298 325 - -
Lapu3g03143 407 Coils Coil 144 189 - -
Lapu3g03143 407 MobiDBLite consensus disorder prediction 1 21 - -
Lapu3g03143 407 MobiDBLite consensus disorder prediction 7 21 - -
Lapu3g03143 407 MobiDBLite consensus disorder prediction 125 142 - -
Lapu3g03143 407 MobiDBLite consensus disorder prediction 116 142 - -
Lapu3g03143 407 Pfam Transcriptional repressor, ovate 334 390 IPR006458 -
Lapu3g03143 407 NCBIfam uncharacterized plant-specific domain TIGR01568 329 390 IPR006458 -
Lapu3g03143 407 MobiDBLite consensus disorder prediction 257 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03143 Lapu-Chr3 54796387 54797607 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Lapu3g03143 Ovate 1.4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03143 - - gmx:106798868 571.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03143 3 54796387 54797607 Lapu3g03143 3 54796387 54797607 ECH
Lapu3g03143 3 54796387 54797607 Lapu6g01384 6 13625678 13626883 PCT