Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03142 ATGGCTTCAGCGGCTATATTTTCGTCGCTCCGGCGGCGCCGGTCACCATCGCTGGAGGCGTTTCTTGTGCCGGTTGACCTCTCTGAGGTGGCGCTGCTGGAGACACTCATCTCCGTCGCTGGAGAGGTCGCATCCTGCTTCTTCGACAACCGGTTCCCCTTCCAGCGCCGGAACTCGCGTGCCCTCATCGGAAAAGTTGAGATTTTCCGGTCAATGTTGGAGTGTTTGAGAGACTCCGCCGACGGTGGCGTTCTTCCCCCCACGGCGGTGCTGTGCCTAAAGGAGCTTTATTTGCTATTATATCGCTCCAAGATTCTCCTTGATTACTGTGCCCGATCGAGCAAGTTGTGGCTCTTGCTTCAGAACCATTGTGTTTCTGGTCACTTCCATGATTTGAGTCAAGAATTTTCGACCCTTTTGGATGTTTTTCCCGTTGGAGATATTGGACTCAGTGATGACGTTAGGGAACAGGTTGAGTTGTTGCAGAGACAGTCCAAAAGGGCTAAGTTGTTCATAGATAAGAAGGATGACGCCCTTAGGATAAGGTTCTTTTGGTTTCTGGATGAGTTTGAGAGTGGGAGAGTCCCTGATTCTAAGGACTTGAGGTGTTTCTTTGTGGATAAGTTGCGGATGCTCGATGCTAAGAGTTGTAGGGTGGAGGTTGAAGCCTTGGAGGAGCAGATTGTGAACCATGAGGGTGATGTTGAGCCAACAGTTACTGTGCTTATTGGGATGGTAGCTATCACAAGGTATTGTAGGTTCTTGTTATTTGGGTTTGAGGAAGAATTGGAAATTGAGATTCAGAAGAGGGCGAGGAAGAGGTTGATTACTCAGGAAATTGCTGAAACGTTTTTTACTGTTCCTAAGGACTTTTGCTGTCCGATAACTTTGGATTTGATGAGTGATCCTGTAACAATTTCTACTGGTCAAACTTATGATAGGAGGTCTATATGGAGGTGGATGGAGGAGGGGCATTGCACTTGTCCCAAAACTGGGCTATTGCTTTCTCATAACAGGCTTGTTCCTAATCGTGCTCTTAGGAATTTGATTATGCAGTGGTGCAGTGCACACGGAGTACCCTATGATCCACCTGAGGGGGTTGATCCATCTGTTGAGATGTTTGCATCAGCTTGTCCCTCCAAAGCTTCCCTTGAAGCTAACCGAGGGACGGCCATGCTTCTCATTCAGCAGCTTGCTGATGGGTCGCAAGTTGCAAAGACTGTGGCTGCTAGGGAGATAAGATTGCTTGCCAAAAATGGAAAGGAAAATCGTGCCTTCATTGCCCAAGCTGGGGCAATTCCTCATCTTAGGAACTTGCTTTCCTCTCCGAATGCTGTTGCACAGGAGAATTCTGTGACTGCACTGCTCAATCTATCCATTTTTGAAAGAAATAAGAGTGTGATCATGGAGGAAGGGTGTTTGGGATCAATTGTTGAGGTGTTGCAATTCGGGCATACGACTGAGGCAAGGGAGAATGCGGCTGCAACATTGTTCAGCCTCTCAGCTGTTCATGAGTATAAGAAACGAATTGCAGATAATGTAGGAGCTGTTGAAGCATTGGCGTGGTTGTTGCAAGAGGGAACTCAAAGAGGGAAGAAAGATGCTGTCACAGCATTATTTAATCTCTCCACCCACACTGAGAATTGTTTGAGAATGATAGAGGCAGGGGCAGTGAAAGCTATGGTCGTGGCTTTGGGGAATGAAGGAGTTGCTGAGGAAGCAGCTGGTGCCTTGGCCTTGATTGTTCGGCAGCCTATTGGTGCCATGGCTGTGGTGAGGGAGGAAGCAGCAGTAGCTGGATTAATAGGAATGATGCGTTGTGGAACGCCAAGAGGCAAAGAGAATGCGGTTGCAGCTTTGCTGGAGTTATGCAGGAGTGGTGGTGCAGCTGCAACTGAAAGGGTGGTTAGGGCGCCGGCATTGGCCGGATTGCTTCAAACCTTGCTTTTTACCGGGACAAAGAGGGCAAGAAGAAAGGCAGCTTCACTTGCTAGAGTGTTTCAGAGATGTGAAAATGCATCTCTGCATTATGGTGGATTGGGTGTGGGTTATGCATTTGCTAGCGATTCAGCTTCAACCAGGAATACTACAAGCTTTTCATCAAGTATACCAATACCATATGTATGCAGAGAAGGATGTGTTGTTGAGCAGTTAGCTTCAACCCATGTGTAA 2172 0.4779 MASAAIFSSLRRRRSPSLEAFLVPVDLSEVALLETLISVAGEVASCFFDNRFPFQRRNSRALIGKVEIFRSMLECLRDSADGGVLPPTAVLCLKELYLLLYRSKILLDYCARSSKLWLLLQNHCVSGHFHDLSQEFSTLLDVFPVGDIGLSDDVREQVELLQRQSKRAKLFIDKKDDALRIRFFWFLDEFESGRVPDSKDLRCFFVDKLRMLDAKSCRVEVEALEEQIVNHEGDVEPTVTVLIGMVAITRYCRFLLFGFEEELEIEIQKRARKRLITQEIAETFFTVPKDFCCPITLDLMSDPVTISTGQTYDRRSIWRWMEEGHCTCPKTGLLLSHNRLVPNRALRNLIMQWCSAHGVPYDPPEGVDPSVEMFASACPSKASLEANRGTAMLLIQQLADGSQVAKTVAAREIRLLAKNGKENRAFIAQAGAIPHLRNLLSSPNAVAQENSVTALLNLSIFERNKSVIMEEGCLGSIVEVLQFGHTTEARENAAATLFSLSAVHEYKKRIADNVGAVEALAWLLQEGTQRGKKDAVTALFNLSTHTENCLRMIEAGAVKAMVVALGNEGVAEEAAGALALIVRQPIGAMAVVREEAAVAGLIGMMRCGTPRGKENAVAALLELCRSGGAAATERVVRAPALAGLLQTLLFTGTKRARRKAASLARVFQRCENASLHYGGLGVGYAFASDSASTRNTTSFSSSIPIPYVCREGCVVEQLASTHV* 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03142 723 SMART Ubox_2 290 353 IPR003613 GO:0004842|GO:0016567
Lapu3g03142 723 SUPERFAMILY ARM repeat 392 667 IPR016024 -
Lapu3g03142 723 Coils Coil 214 234 - -
Lapu3g03142 723 CDD RING-Ubox_PUB 288 340 IPR045210 -
Lapu3g03142 723 SUPERFAMILY RING/U-box 276 361 - -
Lapu3g03142 723 PANTHER U BOX DOMAIN-CONTAINING 83 670 - -
Lapu3g03142 723 Pfam U-box domain 287 357 IPR003613 GO:0004842|GO:0016567
Lapu3g03142 723 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 431 473 IPR000225 GO:0005515
Lapu3g03142 723 Pfam Armadillo/beta-catenin-like repeat 421 459 IPR000225 GO:0005515
Lapu3g03142 723 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 361 IPR013083 -
Lapu3g03142 723 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 515 557 IPR000225 GO:0005515
Lapu3g03142 723 Gene3D - 365 526 IPR011989 -
Lapu3g03142 723 ProSiteProfiles U-box domain profile. 286 360 IPR003613 GO:0004842|GO:0016567
Lapu3g03142 723 FunFam RING-type E3 ubiquitin transferase 363 683 - -
Lapu3g03142 723 FunFam RING-type E3 ubiquitin transferase 286 361 - -
Lapu3g03142 723 SMART arm_5 545 583 IPR000225 GO:0005515
Lapu3g03142 723 SMART arm_5 420 460 IPR000225 GO:0005515
Lapu3g03142 723 SMART arm_5 504 544 IPR000225 GO:0005515
Lapu3g03142 723 SMART arm_5 461 502 IPR000225 GO:0005515
Lapu3g03142 723 Gene3D - 527 654 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03142 Lapu-Chr3 54783808 54786628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03142 1 706 U-box Gene Family AT1G29340 67.862 0.0 896
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03142 - - gmx:100797462 1224.54