Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03123 ATGGATCAGGCGAAAAGCAAAGACAGTGGTGAGGTTTTGGATCATGTTGATGAAAGGCTGGGTGAGGATTTGAACCAATTGGTTGAAGGAAATGCAACTGATGCAGGAGGTGGACATAGCTTGGGTGAAAGAGTTAGTGTAAGTGGGGAAGATGGGACTCCAGAAGAGATGCGTAATGATCTTGGTTTGAATGGGGAGCTAAAAGAGGGGCTACAAGAAGTTAATGATCAGAACCTTGGTGACCCTCTAGAAATTAATGATACATTACATGGGGTTGATCAAGGAACCAGTTACAGTTCAAGAAATTTGATTGGTGGGGAAGTACCTGAGACTTGTGTTGTAATAGATCCTTCCGCTCAGATTGATTGTGTCAGTGGAGAAAATAGGAAAGTGGAAGCAAAACCTAATGATTCAGGGTTGAGCAAGGTGTCCATGAAAGTAACGAAAGGGGTGTCTGAGATAGATAAAAATTCATGTGTGATTGATATAAACCGTGGCAGCTGCGACGGTTTTAGTGAGAATTTGGAAGGTGAAATGATTTGTAGAATTTGCCATCTGGCCTCTGGGCAACCATTGGAAGCAGCAGCTGTTGGCAATGGAAGTAGTGCTACTACTAATACAGATTTGATTCAGCTTGGTTGTGCCTGCAAAGATGAGTTAGGCATTGCTCACAGTCATTGTGCTGAGGCATGGTTCAAGATTAAAGGAAACAGATTGTGTGAAATATGTGGTGAGACTGCAAAAAATGTCGCGGACGTTATTGATCATGTGTTTATGGAAGAGTGGAATGATACTAGATTCATGGGCAATGATAATACATCATCCAGAAGATTTGGCGGATGCTGGCGCGGACAACCATTTTGTAACTTCTTAATGGCATGCCTGGTTATAGCTTTTGTTCTACCATGGTTCTTTCGTGTAAATATGTTCTAG 933 0.4212 MDQAKSKDSGEVLDHVDERLGEDLNQLVEGNATDAGGGHSLGERVSVSGEDGTPEEMRNDLGLNGELKEGLQEVNDQNLGDPLEINDTLHGVDQGTSYSSRNLIGGEVPETCVVIDPSAQIDCVSGENRKVEAKPNDSGLSKVSMKVTKGVSEIDKNSCVIDINRGSCDGFSENLEGEMICRICHLASGQPLEAAAVGNGSSATTNTDLIQLGCACKDELGIAHSHCAEAWFKIKGNRLCEICGETAKNVADVIDHVFMEEWNDTRFMGNDNTSSRRFGGCWRGQPFCNFLMACLVIAFVLPWFFRVNMF* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03123 310 Pfam RING-variant domain 200 243 IPR011016 GO:0008270
Lapu3g03123 310 SUPERFAMILY RING/U-box 178 246 - -
Lapu3g03123 310 SMART ringv_2 180 244 IPR011016 GO:0008270
Lapu3g03123 310 MobiDBLite consensus disorder prediction 1 61 - -
Lapu3g03123 310 ProSiteProfiles Zinc finger RING-CH-type profile. 173 250 IPR011016 GO:0008270
Lapu3g03123 310 PANTHER ZINC FINGER, RING-CH-TYPE 76 310 - -
Lapu3g03123 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 167 253 IPR013083 -
Lapu3g03123 310 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03123 Lapu-Chr3 54541232 54544688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03123 161 309 C3H Transcription Factor Family AT5G05830 39.103 8.48e-29 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03123 - - gmx:100791129 561.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03123 3 54541232 54544688 Lapu3g03123 3 54541232 54544688 ECH