Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03122 ATGCGCATGATGGACCATCCAAATGTGATCTCTCTGAAACACCGTTTCTTTTCCACTACAAGTGCAGATGAACTTTTTCTTAATTTGGTGATGGAATATGTTCCAGAATCAATACATCGAGTCTCAGAGTTCTATAGTAATACTAATCAGAGCATGCCGCTTATCTTTGTAAAACTTTACATGCACCAGATTTTCCGGGGGCTGGCTTATATCCACACTGTCCCTGGAGTTTGCCACAGAGATTTGAAGCCTCAAAATATACTGGTTGATCCTCTTACACACCAGGTTAAGATATGTGATTTTGGAAGTGCCAAAGTGCTGGTTAAAGGTGAAGCTAATTTATCACACATATGTTCACTTTTCTATCGGGCACCCGAACTTATATTTGGTGCCACTGAGTATACAACTTCAATTGATATTTGGTCAGCTGGCTGTGTCCTTGCTGAACTGCTTTTGGGCAAGCCATTATTTCCTGGCGATAATGCGGTGGACCAACTTGTAGAGATTATCAAGGTTCTTGGCACACCCTCTCAAGAGGAAGTTTGCTGTTCAAATTCAAACAACAATGATTTCAAGTTTCCACAGATATTCCACACAAAAATGCCGCCAGAAGCAATTGATCTTGCTTCCCGGCTTCTGCAGTATTCCCCAGCTCTTCGTTGTACTGCGCTAGAAGCATGTGCACACCCGTTCTTTGATGAACTCCGTGAACCCAATGCTCACTTGCCAGATGGTCGTCCATTTCCCCCTCTATTCAACTTTAAGCAAGAGTTATGTGGAGCGTCTCCAGAGCTTATTGACAAGTTGATTCCTGATCATGTGAAGTGGAAGACAGGGCTAGAACATATCCATTTTGGTGGAACATGA 867 0.4279 MRMMDHPNVISLKHRFFSTTSADELFLNLVMEYVPESIHRVSEFYSNTNQSMPLIFVKLYMHQIFRGLAYIHTVPGVCHRDLKPQNILVDPLTHQVKICDFGSAKVLVKGEANLSHICSLFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGKPLFPGDNAVDQLVEIIKVLGTPSQEEVCCSNSNNNDFKFPQIFHTKMPPEAIDLASRLLQYSPALRCTALEACAHPFFDELREPNAHLPDGRPFPPLFNFKQELCGASPELIDKLIPDHVKWKTGLEHIHFGGT* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03122 288 Gene3D Phosphorylase Kinase; domain 1 1 35 - -
Lapu3g03122 288 SMART serkin_6 1 232 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g03122 288 ProSiteProfiles Protein kinase domain profile. 1 232 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g03122 288 CDD STKc_GSK3 1 235 IPR039192 -
Lapu3g03122 288 Gene3D Transferase(Phosphotransferase) domain 1 36 275 - -
Lapu3g03122 288 Pfam Protein kinase domain 1 232 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g03122 288 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 275 - -
Lapu3g03122 288 FunFam Shaggy-related protein kinase kappa 36 275 - -
Lapu3g03122 288 SUPERFAMILY Protein kinase-like (PK-like) 1 238 IPR011009 -
Lapu3g03122 288 ProSitePatterns Serine/Threonine protein kinases active-site signature. 77 89 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03122 Lapu-Chr3 54526874 54531118 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03122 1 240 Core Cell Cycle Gene Families AT1G76540 35.341 2.04e-50 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Lapu3g03122 Pkinase 6.2e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03122 K14502 - gmx:100810237 545.043