Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03120 ATGAAGCCCTTTTGCAGATTCTTGATTCTCCTAACGCTATTTTCTCAGGTGGAATCTTCATGCAACAGTGAAGAAGAGCACGTCTTGGTGTCAAAGGCTTTCAAATCAGTCTCTGGCTTCAACGCTTACTCCTGGTTCCATACCAACTGCTCACAGGCTCACATCACCCGCATAGTACTTCCATCCCAAAACCTCACTGGCACAATCTCCTGGGGTTACCTGAGGAACATGTCCAACCTGCAGGTTCTTGATCTCTCTGGAAATTCATTACAAGGCCACGTGCCAAGCTGGTTTTGGTCAACTTCATCCTTGTTGGAGATAAACCTCTCCAGAAACAGGTTCGGAGGGAGCATCACTATCCACTCCTCCAAACCCACATCACAAAACACCTCGTTTTCAATTTCATCCATTCAAACGCTCAACCTCTCCCACAACAGGTTCACCAATTCAATCCAACTTTCTGCCTTCCAGAACCTTAAAATCCTCGACCTTTCCAACAACAACCTGCGAACACTCCCCTCCGGGCTCCAAAACCTCTCCAGGCTTCAACACCTCGACCTCTCAAGCTGTAATCTCCGAAGCAACGTAAAACCGGTTTCCTCTCTTCACTCACTTCGCTACTTGGACTTATCAAACAACACCTTCACCGGAAGTTTCCCTTTTGATTTCCCTCCACTCGCCACCCTCGAATTCCTGAACATCTCCTACAACAGCTTCACCTCATCAACTAGCCTAGCCAAGTTCAACAGATTCGGTAAATCAGCTTTTGTCCACGCTGGCAACAACTTCACCTACGACAACACGTCCAAAACGACTAACAGCAGTAAAAACTCAGCGCAAGCCACCAACAGCATACAACAGAAGCGAAAATCCAAAACCTTGATTGCTGCGGCGTCGTCTGCAGGAGTGGCACTTGTCCTAATTCTGTTGTCCATTTGGGTACTCCGCATTATTATTCAGAAGAGGAAGCAACGCGCCAAGAGGAACAAGTGGGCGATTTCCATGCCGGTCCCACATGGGATGAACGTGGTGACTAGCAGGGTGGAGAAATCAGGGCCCTTCTCGTTCGAGACTGAATCGGGGTCAACGTGGGTGGCTGACCTGAAGGAACCGTCTTCTGCGCCGGTAGTGATGTTCGAGAAGCCGTTGATGAACCTTACCTTCAAGGACCTCATTGTTGCCACGTCACACTTCGGGAAAGACTCGCTGCTCGCGGAGGGAAGGTGTGGGCCCGTGTACAGGGCCGTGCTGCCCGGGGACCTCCACGTGGCAATCAAGGTCCTGGAACACGCTAGAGACGTTGATCCTGATGACTCCGTCGCCACGTTCGTTGACCTCTCCAGACTCAAGCACCCCAACTTGTTGCCCCTCTCCGGTTACTGCATTGCTGGTAAGGAGAAACTGGTACTCTACGAGTACATGGCGAACGGCGACCTAGGAAGGTGGCTACACGAGCTTCCCACTGGGGACACCAACGTGGAGGATTGGACAAGCGACACGTGGGAGATTCAAAACGGCGTCGTGGATGATGGGGCCCCGGAAAAGATGGGGTGGCTGACACGACACCGTATCGCGGTTGGGATAGCGCGTGGTCTCGCGTACTTGCACCACGCGCGTTCGAAGCCCGTGGTGCACGGCCACCTCGTCACCTCCAACATTCTACTCGCCGACAATTTCGAGCCCCGGATCTCCGATTTCGGGTTGCGACCAGACCCGAACCAGAACGGCGGCACGGAGGCCGACGTGTACCGCTTCGGGGCGGCACTGATGGAGCTCATAACGGGGAAGGAGAGCACGGCGGAGACGGTAGCAGCGGCGAGGAAGGCGGTGAGGGAGGGGCAGGGCGTTAGGGTTGTGGACGAGAGGCTCCTACTCGGTGGTGAGTCGTTAGTGAGTGAGATGGTGGAGAGTCTCCGAGTGGCGTTTCTGTGTACGGCGGAAGACGCTTGGAAGAGGCCCACAATGCAGCAAGTTTTGGGTTTGCTGAAAGACATTCGTCCTCATGAACAGCAACTCGTCACGAGTTGA 2028 0.5345 MKPFCRFLILLTLFSQVESSCNSEEEHVLVSKAFKSVSGFNAYSWFHTNCSQAHITRIVLPSQNLTGTISWGYLRNMSNLQVLDLSGNSLQGHVPSWFWSTSSLLEINLSRNRFGGSITIHSSKPTSQNTSFSISSIQTLNLSHNRFTNSIQLSAFQNLKILDLSNNNLRTLPSGLQNLSRLQHLDLSSCNLRSNVKPVSSLHSLRYLDLSNNTFTGSFPFDFPPLATLEFLNISYNSFTSSTSLAKFNRFGKSAFVHAGNNFTYDNTSKTTNSSKNSAQATNSIQQKRKSKTLIAAASSAGVALVLILLSIWVLRIIIQKRKQRAKRNKWAISMPVPHGMNVVTSRVEKSGPFSFETESGSTWVADLKEPSSAPVVMFEKPLMNLTFKDLIVATSHFGKDSLLAEGRCGPVYRAVLPGDLHVAIKVLEHARDVDPDDSVATFVDLSRLKHPNLLPLSGYCIAGKEKLVLYEYMANGDLGRWLHELPTGDTNVEDWTSDTWEIQNGVVDDGAPEKMGWLTRHRIAVGIARGLAYLHHARSKPVVHGHLVTSNILLADNFEPRISDFGLRPDPNQNGGTEADVYRFGAALMELITGKESTAETVAAARKAVREGQGVRVVDERLLLGGESLVSEMVESLRVAFLCTAEDAWKRPTMQQVLGLLKDIRPHEQQLVTS* 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03120 675 Gene3D Phosphorylase Kinase; domain 1 358 473 - -
Lapu3g03120 675 ProSiteProfiles Leucine-rich repeat profile. 158 180 IPR001611 GO:0005515
Lapu3g03120 675 Gene3D Ribonuclease Inhibitor 130 251 IPR032675 -
Lapu3g03120 675 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 55 666 - -
Lapu3g03120 675 FunFam Calmodulin-binding receptor kinase CaMRLK 135 245 - -
Lapu3g03120 675 SMART LRR_typ_2 156 178 IPR003591 -
Lapu3g03120 675 SMART LRR_typ_2 202 225 IPR003591 -
Lapu3g03120 675 SMART LRR_typ_2 77 100 IPR003591 -
Lapu3g03120 675 Gene3D Transferase(Phosphotransferase) domain 1 474 573 - -
Lapu3g03120 675 Gene3D Transferase(Phosphotransferase) domain 1 574 674 - -
Lapu3g03120 675 Pfam Protein tyrosine and serine/threonine kinase 402 571 IPR001245 GO:0004672|GO:0006468
Lapu3g03120 675 SUPERFAMILY Protein kinase-like (PK-like) 375 666 IPR011009 -
Lapu3g03120 675 Gene3D Ribonuclease Inhibitor 13 129 IPR032675 -
Lapu3g03120 675 Pfam Leucine rich repeat 136 192 IPR001611 GO:0005515
Lapu3g03120 675 Pfam Leucine rich repeat 55 114 IPR001611 GO:0005515
Lapu3g03120 675 ProSiteProfiles Protein kinase domain profile. 398 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g03120 675 FunFam Putative LRR receptor-like serine/threonine-protein kinase 359 473 - -
Lapu3g03120 675 PRINTS Leucine-rich repeat signature 159 172 - -
Lapu3g03120 675 PRINTS Leucine-rich repeat signature 202 215 - -
Lapu3g03120 675 SUPERFAMILY L domain-like 41 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03120 Lapu-Chr3 54496685 54499520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03120 55 665 Receptor kinase-like Gene Family AT5G07280 30.441 2.10e-70 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Lapu3g03120 PK_Tyr_Ser-Thr 5.6e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03120 - - gmx:100788556 1056.59