Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03117 ATGTCTGATGAATATGAGAGGAGTGATGAACAGGTTGATGACAGTTCAATGGGATCATCCCAAAAGTGCTCCTCCTTTGATTTGAACGAAGAAGCTAGTAGTGAAAATAATAGCAACGGTAATGACAAGATATACGAGGAAGCTAAGGACGAAGGTACTTCAACAAATAAAAGTAGCAGCATAACAAGGGAAGGAAATAATGAACGAAGAGGTGGTGTGAGACAATACGTTAGATCAAAGATGCCTAGGCTTCGTTGGACACCTGAACTTCATCTATCCTTTGTGCATGCTGTTGAAAGGCTTGGTGGTCAAGAGAGAGCAACACCCAAACTGGTGCTTCAGCTAATGAATGTAAGAGGACTCAGCATTGCTCATGTCAAGAGTCATTTGCAGATGTATCGGAGCAAGAAACTCGATGAGGCTGGGCAAGTATTAAGTGAAAGATACAAATCAACCCATGAACTTGGTCGTATTTCTCATGTGACCCATCCTCGTCAACATTTTAAGATGGGAAATGGTGGAATTATTCTAGCAAGTGATTACAGCGAGCACAGTTATTTCCAAGGTCTCTTGCATCCTTCCACCCTATCACATTCAAAAGCCATTGATTCAAGGCACCAACAATGGTACTTCAACGATCATCAACCTTTTAGAAGACCGAGTTACTTTAGCAACGAAGTTGCCTCAACAGCCTTACAAACGCAAGGAAGATCAATGTCTTCAAACCAAATTCAACTGATGGATGCTACCAGTATTGCACCCATGAGACCAAGCCAATTTCTTGAAGAGAAAAGATGGCCTCCATTAGAAGTTATGAACAATCATCCCTGGAAGAAAAGGTTACCTGCCAATATTAATACTGAGTCACAATCTCTTGTTCATCAATTTGAAAGCACTACTCCAGCATCTCTTAGACCAAGTGAGTTGAACTTCACGAACAAAACAAGAATCAGGGAACATCAATCTAACTCCCATGAGCATTGCAGCTATTCCAACAGTTTCAAGCTAGAATTTGAACCTCCATTTCGGATTAAGTCGAATCAAGAAAAAATGCAGAAAGACAAGCAATGGGTGCCTGATTTGCGACTGAGTTTAAGCCAGAGAGGTGGCAACAGTACTGATGGCAAGACTGATCATTGCAGAGAAACCCAAGAAATCAATACGAAACTTTCACTTTCATAG 1182 0.4112 MSDEYERSDEQVDDSSMGSSQKCSSFDLNEEASSENNSNGNDKIYEEAKDEGTSTNKSSSITREGNNERRGGVRQYVRSKMPRLRWTPELHLSFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDEAGQVLSERYKSTHELGRISHVTHPRQHFKMGNGGIILASDYSEHSYFQGLLHPSTLSHSKAIDSRHQQWYFNDHQPFRRPSYFSNEVASTALQTQGRSMSSNQIQLMDATSIAPMRPSQFLEEKRWPPLEVMNNHPWKKRLPANINTESQSLVHQFESTTPASLRPSELNFTNKTRIREHQSNSHEHCSYSNSFKLEFEPPFRIKSNQEKMQKDKQWVPDLRLSLSQRGGNSTDGKTDHCRETQEINTKLSLS* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03117 393 Gene3D - 81 138 - -
Lapu3g03117 393 NCBIfam myb-like DNA-binding domain, SHAQKYF class 82 137 IPR006447 GO:0003677
Lapu3g03117 393 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 56 237 IPR046955 GO:0003700
Lapu3g03117 393 SUPERFAMILY Homeodomain-like 80 136 IPR009057 -
Lapu3g03117 393 MobiDBLite consensus disorder prediction 14 41 - -
Lapu3g03117 393 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 78 138 IPR017930 -
Lapu3g03117 393 FunFam Myb family transcription factor 80 138 - -
Lapu3g03117 393 MobiDBLite consensus disorder prediction 365 393 - -
Lapu3g03117 393 Pfam Myb-like DNA-binding domain 84 134 IPR001005 -
Lapu3g03117 393 MobiDBLite consensus disorder prediction 1 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03117 Lapu-Chr3 54470039 54474386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03117 73 139 G2-like Transcription Factor Family AT2G42660 82.090 1.20e-33 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lapu3g03117 Myb_DNA-binding 2.7e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03117 - - gmx:100808625 650.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03117 3 54470039 54474386 Lapu3g03117 3 54470039 54474386 ECH