Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03115 ATGGCAGAGCTGACACCGAAGAAGGAAAACCCGAACCTTCTGCTGGGCCGGTTCGAGCTGGGGAAACTCCTGGGGCACGGAACCTTCGCGAAGGTCCACCATGCGAGGAACATCAAAACCGGGGAAGGAGTGGCCATCAAGATCATAAACAAGGAAAAGATCCTTAAGGGCGGTTTGGTGTCCCACATCAAGCGCGAGATCTCCATCCTCCGCCGCGTTCGCCACCCCAACATCGTCCAACTCTTCGAAGTTATGGCCACCAAAACCAAGATCTACTTCGTCATGGAATACGTACGCGGCGGCGAGCTCTTCAACAAGGTCGCCAAGGGAAGGTTGAAGGAAGAAGTTGCCAGAAAGTACTTCCAGCAGCTGGTTTCTGCGGTGGAGTTTTGCCACGCACGCGGGGTGTTCCACAGGGACATCAAGCCCGAGAATTTGTTGCTGGATGAGGATGGGAACCTTAAAGTCTCCGACTTTGGACTCAGTGCTGTGTCGGATCAGATTAGGCAGGACGGACTGTTCCACACGTTTTGTGGGACACCTGCGTATGTTGCTCCTGAGGTTTTGGCGCGGAAAGGGTATGATGGTGCCAAGGTTGATATTTGGTCTTGTGGGGTTGTTTTGTTTGTTTTGATGGCGGGGTATTTGCCTTTCCATGACCGTAATGTTATGGCCATGTACAAGAAGATTTACAAGGGTGAGTTTCGGTGTCCCAGGTGGTTCTCTCCTGAACTTACTAGACTTCTCTCTAGGCTTCTTGATACCAACCCTCAGACCAGGATTTCTATTCCTGAAATCATGGAAAATCGCTGGTTCAAGAAGGGTTTCAAGCAGATAAAGTTCTATGTGGAGGATGATAGAGTTTGTAGCTTTGATGATAAGTTGCAGTTGCAGCCCCATGATGGTGGTGGGGATGATGATTTGGCAACATCGGATTCCGAGGTTGAAATTAGGAGGAAGAATAGTCATAATGCTTCCTTGCCAAGGCCTGCGAGTTTGAATGCATTTGACATCATATCGTTTTCGCAGGGCTTTGATCTCTCTGGGTTGTTTGAGGAGAAAGGGGATGAGGCCAGGTTTGTGACTTCTGCTCCAGTGTCTAAGATTATATCCAAATTGGAGGAGGTTGCTCAGTTGGTTAGCTTCACGGTGAGGAAAAAAGATTGTAGGGTGAGCTTGGAGGGTTGCAGAGAAGGTGTGAAGGGGCCTTTGACCATTGCAGCTGAGATTTTTGAGTTGACACCGTCCTTGGTGGTTGTGGAGGTGAAGAAAAAGGGAGGGGATAAGGCAGAGTATGACAAGTTTTGTAACTCTGAATTGAGACCCGCGTTGGAGAATTTGGTTAGGGAGGAATCTGCTTCTTCGTCTTACCAATCTACGCACATTGAATCTGAACTGCATCAACGAACACTCTCTGACTCTGCCCTTAACATACATTCAGATAGTGAAAGTCTGTACCAACAAGACTTGGCTGAAGTAGAAAAAGCTAATATCCGAAAACATGGTGAATCAATATTCGAAATCTCATAG 1530 0.4804 MAELTPKKENPNLLLGRFELGKLLGHGTFAKVHHARNIKTGEGVAIKIINKEKILKGGLVSHIKREISILRRVRHPNIVQLFEVMATKTKIYFVMEYVRGGELFNKVAKGRLKEEVARKYFQQLVSAVEFCHARGVFHRDIKPENLLLDEDGNLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARKGYDGAKVDIWSCGVVLFVLMAGYLPFHDRNVMAMYKKIYKGEFRCPRWFSPELTRLLSRLLDTNPQTRISIPEIMENRWFKKGFKQIKFYVEDDRVCSFDDKLQLQPHDGGGDDDLATSDSEVEIRRKNSHNASLPRPASLNAFDIISFSQGFDLSGLFEEKGDEARFVTSAPVSKIISKLEEVAQLVSFTVRKKDCRVSLEGCREGVKGPLTIAAEIFELTPSLVVVEVKKKGGDKAEYDKFCNSELRPALENLVREESASSSYQSTHIESELHQRTLSDSALNIHSDSESLYQQDLAEVEKANIRKHGESIFEIS* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03115 509 CDD STKc_SnRK3 17 271 - -
Lapu3g03115 509 FunFam Non-specific serine/threonine protein kinase 9 97 - -
Lapu3g03115 509 SMART serkin_6 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g03115 509 FunFam Non-specific serine/threonine protein kinase 330 448 - -
Lapu3g03115 509 Gene3D Transferase(Phosphotransferase) domain 1 8 326 - -
Lapu3g03115 509 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524
Lapu3g03115 509 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Lapu3g03115 509 CDD CIPK_C 334 444 - -
Lapu3g03115 509 Gene3D Kinase associated domain 1, KA1 330 450 - -
Lapu3g03115 509 ProSiteProfiles NAF domain profile. 328 352 IPR018451 GO:0007165
Lapu3g03115 509 FunFam Non-specific serine/threonine protein kinase 8 322 - -
Lapu3g03115 509 Pfam Protein kinase domain 19 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g03115 509 SUPERFAMILY Protein kinase-like (PK-like) 14 273 IPR011009 -
Lapu3g03115 509 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 10 444 - -
Lapu3g03115 509 ProSiteProfiles Protein kinase domain profile. 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g03115 509 Pfam NAF domain 330 386 IPR004041 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03115 Lapu-Chr3 54440942 54443055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03115 4 462 CBL-interacting serine-threonine protein kinases AT4G18700 77.634 0.0 749
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Lapu3g03115 Pkinase 2.3e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03115 - - gmx:100807567 885.945