Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03098 ATGGGTATGGAACGTAAAAACCAAAGGGCCAAGGAGGAGAAATTGTGTGAGAAACTGAAGATCAAGAATAAGCCCAAGTTTGTTGGGGTGAGACAAAGGGCTTCAGGAAAATGGGCAGCAGAGATCAAAGACACGTCAAAGAAGATTAGGATGTGGCTTGGTACTTATCAAACTGCTGAGGAAGCTGCTCGAGCTTATGATGAAGCTGCTTGTCTCCTTAGAGGTTCAAACACTCGCACCAATTTCTCCACTCATGGGTGTAGTAGCATTGCTACAAATTCTCCTATATCTCTAAAACTTAGAAACCTCCTTGATCGTAAAGCCATGTCAAATCAAAGTCAAGTTCAAAACCAGCCCTCTAGTGTAAGTCCAACTTTCCAAGGTGCAACTTGTCCAAATGGTAGTACCATCAATAACATCATGGTCATGGAAGAAAACTCTGCTTGTAGTGATGAAGGTAAGTCTTTGTTTGTGGTTCAGAACCAAGTCTCTGATAACATGTATGAACTAGATATGAATATGATCAATTGTGCAATGGGTATCCCACCAAATGCATCGCAGCTGGATTTCTCTTGGCCTTTAGCTCAACAAAGGATTAACGATTTACCATTACCAAAAGATGGTTTCAATGTAGAGAGGCAATTATCAGACTTGATGATGAGGAAGAGAGTTCTGAAATGGCATGCTTTGTAG 693 0.4113 MGMERKNQRAKEEKLCEKLKIKNKPKFVGVRQRASGKWAAEIKDTSKKIRMWLGTYQTAEEAARAYDEAACLLRGSNTRTNFSTHGCSSIATNSPISLKLRNLLDRKAMSNQSQVQNQPSSVSPTFQGATCPNGSTINNIMVMEENSACSDEGKSLFVVQNQVSDNMYELDMNMINCAMGIPPNASQLDFSWPLAQQRINDLPLPKDGFNVERQLSDLMMRKRVLKWHAL* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03098 230 Pfam AP2 domain 25 75 IPR001471 GO:0003700|GO:0006355
Lapu3g03098 230 Gene3D AP2/ERF domain 26 85 IPR036955 GO:0003700|GO:0006355
Lapu3g03098 230 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700|GO:0006355
Lapu3g03098 230 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Lapu3g03098 230 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 22 127 - -
Lapu3g03098 230 CDD AP2 25 82 IPR001471 GO:0003700|GO:0006355
Lapu3g03098 230 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Lapu3g03098 230 FunFam ethylene-responsive transcription factor RAP2-11 25 84 - -
Lapu3g03098 230 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Lapu3g03098 230 SUPERFAMILY DNA-binding domain 26 83 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03098 Lapu-Chr3 54246200 54247021 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03098 6 217 AP2-EREBP Transcription Factor Family AT5G19790 44.131 6.89e-41 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu3g03098 AP2 5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03098 K09286 - gmx:100803832 306.219
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03098 3 54246200 54247021 Lapu3g03098 3 54246200 54247021 ECH