Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03078 ATGCGAACTTCATGGGCTGATTTGGCTGCAAATTCTGCAGCTGAAAATGCAGGTCCCGGTTTTTCTGCTAACAATGTGGGAACTGGTAGCACTTTAGCTCCTTCAAGACCAGTTTATGTTCCTCCCCATCTCAGGAATCGCCAGACATCAGCAGAAGCACCCGCACCAGCTTACAGTGGCCCTTCTTCTGGTTCTGTTGGCTCTAGTGTTGCTGGTAATTCTGGTTCCCGTTGGCCTGCACCCAGAAACGAGAATCGGTCTGGGTATGGTGGTGGTGGACGCACAGGTGGATGGGGAAATAAAAGTGGTGGATGGGATCGTGGCAGGGAAGTCAATCCCTTTGAAGAAGAGGATAATGCTGAAGAGGCATTTAGTGAGCAGGAGAATACAGGAATAAATTTTGATGCATATGAGGACATTCCAGTGGAGACCAGTGGTGAAAATGTGCCCCCACCTGTGAATACATTTGCAGAGATTGACTTGGGTGATGCACTTAATGAGAATATAAGAAGGTGCAAATATGTGAAGCCAACACCTGTTCAGCGGCATGCCATACCAATATCCCTTGCTGGACGGGATTTGATGGCTTGTGCACAGACTGGTTCTGGAAAGACAGCTGCATTCTGTTTCCCGATCATCAGTGGAATTATGAGGGGCCAACCTGTCCAGAGGCCACCTCGCGGGGTGCGAACAGTTTATCCACTTGCGCTTGTTCTCTCTCCTACGAGGGAGCTATCAATGCAAATACATGAAGAGGCTAGGAAGTTTTCATACCAAACTGGTGTTAGGGTGGTTGTTGCTTATGGTGGAGCACCAATAAACCAGCAGCTGCGGGATCTTGAAAGAGGGGTGGACATTCTCGTTGCAACTCCTGGAAGACTGGTAGATTTGCTGGAGAGAGCTAGAGTTTCACTGCAGATGATTCGATATCTGGCCTTAGACGAGGCAGATCGGATGCTAGATATGGGTTTTGAGCCACAAATAAGGAAGATTGTAGAACAAATGGACATGCCTCCACCGGGTGTTAGACAGACTATGTTGTTCAGTGCAACATTTCCGAAAGAGATACAGAGACTGGCTTCTGATTTTCTTTCAAATTATATTTTCCTGGCTGTTGGAAGAGTGGGTTCAAGTACTGATTTAATTGTCCAAAGAGTTGAGTATGTTCAAGAGTCTGACAAGAGAAGTCACCTAATGGACCTTCTCCATGCACAGAGGGCAAATGGTGTACAGGGAAAGCAAGCTTTGACCTTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATTCACTGGAACACTGGTTGTGCCTTAATGGTTTTCCTGCAACTACTATTCATGGTGACAGGTCGCAGCAGGAAAGAGAATTAGCATTGAGGTCCTTTAAAAGTGGCAACACCCCCATATTGGTTGCTACCGATGTTGCTGCACGTGGTCTTGATATTCCCCATGTTGCTCATGTAGTCAACTTCGACCTGCCAAATGATATTGATGATTATGTGCACCGAATTGGAAGAACTGGGCGTGCTGGAAAGAAAGGCCTTGCAACTGCATTCTTCAATGATAACAATTCATCTCTAGCTAGAGCTTTAGCGGATCTGATGCAAGAAGCAAATCAAGAAGTACCTGCTTGGCTCTCCCGGTATGCTGCTCGGTCCTTTGGTGGAGGGAGAAACAGGCGATCAGGTGGTCGGTTTGGTAGTCGTGACTTTCGAAGAGAGGGCTCGTTTACTAGAGGTTCTTCAGATTACTACAGTTCAGGAAACAGCAGTGGTGGATATGGAGGGTCTGGTGGGTATGCTGGAGGGTACGCTGGAGGGTATGGTCCTGGCGTCACTAGTGCCTGGGACTGA 1848 0.4751 MRTSWADLAANSAAENAGPGFSANNVGTGSTLAPSRPVYVPPHLRNRQTSAEAPAPAYSGPSSGSVGSSVAGNSGSRWPAPRNENRSGYGGGGRTGGWGNKSGGWDRGREVNPFEEEDNAEEAFSEQENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGDALNENIRRCKYVKPTPVQRHAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRGQPVQRPPRGVRTVYPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGVRQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADSLEHWLCLNGFPATTIHGDRSQQERELALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNSSLARALADLMQEANQEVPAWLSRYAARSFGGGRNRRSGGRFGSRDFRREGSFTRGSSDYYSSGNSSGGYGGSGGYAGGYAGGYGPGVTSAWD* 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03078 615 Gene3D - 373 551 IPR027417 -
Lapu3g03078 615 CDD DEADc_DDX3_DDX4 155 376 IPR044763 GO:0003724|GO:0005524
Lapu3g03078 615 CDD SF2_C_DEAD 382 518 - -
Lapu3g03078 615 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 154 182 IPR014014 GO:0003724
Lapu3g03078 615 SMART helicmild6 428 509 IPR001650 -
Lapu3g03078 615 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 124 548 - -
Lapu3g03078 615 SMART ultradead3 173 385 IPR014001 -
Lapu3g03078 615 FunFam ATP-dependent RNA helicase RhlB 373 551 - -
Lapu3g03078 615 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 185 370 IPR014001 -
Lapu3g03078 615 MobiDBLite consensus disorder prediction 52 81 - -
Lapu3g03078 615 MobiDBLite consensus disorder prediction 1 129 - -
Lapu3g03078 615 MobiDBLite consensus disorder prediction 17 32 - -
Lapu3g03078 615 Pfam Helicase conserved C-terminal domain 394 509 IPR001650 -
Lapu3g03078 615 FunFam Probable ATP-dependent RNA helicase DDX4 116 372 - -
Lapu3g03078 615 Gene3D - 109 372 IPR027417 -
Lapu3g03078 615 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 381 548 IPR001650 -
Lapu3g03078 615 Pfam DEAD/DEAH box helicase 178 359 IPR011545 GO:0003676|GO:0005524
Lapu3g03078 615 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 235 526 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03078 Lapu-Chr3 54032640 54041133 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03078 152 541 Eukaryotic Initiation Factors Gene Family AT3G19760 31.969 5.79e-62 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03078 K11594 - gmx:100795756 1007.28