Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03064 ATGGAGGGAGAGGCTTGTTCGGAGGGAGAGAATAATCGGAAAACGGGTGGCACAGACGATGATAGCAATGAGAATAACAACAACAATCATGGAATCAGTAGCAAGATTGTGAATTCTAATGAGGGGCAGAGCAAGCCCAAGCGCCAGATGAAAACCCCTTTTCAACTTGAAACCCTCGAGAAGGCTTATGCTGTGGATAATTACCCGTCGGAGACGATGAGGGGTGAGCTTTCTGAGAAACTGGGTTTGTCGGATCGGCAGCTTCAGATGTGGTTCTGTCATAGGAGGTTGAAGGACAAGAAGGACTTGACGTCCAAGAAGCTGCCACGGAAGGTGGTGGCAGAGCCTTTGCCGGAATCACCAACAGACGACCCCATGTTGGGCCCTCCGGAGCTTGGTAATGAGTATGGATCCGGGTCTGGTTCAGGGTCCAGCCCTTATGCCCGAGTGGAGCCCATGAACACTGTTCCCCGGGGTGTGCCCGTTTATTATGAGTCCCCACGGACTATGATGGAGAATAGAGCAATTGCTTGTGTTGAGGCGCAGTTAGGGGAGCCGTTGAGGGAAGATGGACCAATACTAGGAGTAGAGTTTGATCCATTGCCACCAGATGCCTTTGGAGCACCTTTAGCGGTTACTGAACAGCAGAAGCTACCTAGTTTTGCCTATGACAATAAGATATATGAAAGACATGAAGTTAGAGCCAATAAGGCTATGGCCAGGACATTCCGTGACTATCGATCTCTATCTAGCCAGTCTGGTGCTAGGTCTGATACTTCTGGACAGTTCAGCCAATCTCATTTACATGATCCAATAGAAGGTCATGCCAGAAATCCTCATTTTGCCCTTGGAAATGAAACTCTACCCAGAATTCGTGCTAGTCAAAGTCATTTCCGTGCTCGTCTTTTGTCTCAACAAGATAAGCAATTGATTCCCTATCAATCTCCTACACGGGACGATAAGGCTGGTCCAATAAGGGAATTGGACACAACCATACTTAATGTTGGAACGAGCTCTCACTTTGCTGATCACCAAATTGTTGTGCCAGAAAATCTCCATGCTCAACCAAGTGGTCAAGTTTTGCATAACAACAGTGCAACACGGATTGAGAAGAAACGAAAGAGTGATGATGTCCGAGATGTAGAAGCACATGAGATGAAAATCCGGAAAGAGATTGAGAAGCAGGATAACCTTAGACGAAAGAGTGAAGAGAGGATGAGAAAAGAAATAGAGAAACAAGATCGTGAAAAAAAGAAGGAAGAAGAGAGGTTAATGCGTGAGAGACAACGAGAAGAGGAAAGAGCAAGACGTGAGCAAAAACGTGAAATTGAGCGAAGGGAAAAGTTTTTACTGAAAGAAAACTTAAGAGCAGAAAAAATGAAGATAAGAGAAGAGCTTCGCAAAGAGAAAGAAGCAGAGAGAAGGAAAGTTGCCCTTGAGAGGGCAACTGCCCGAAGAATAGCTAAGGAATCTATGGAACTTATTGAGGATGAACAGCTGGAAATGATGGAGTTGGCTGCCTCAAGCAAGGGGTTTTCCTCTATTATTCATCTTGATTTTGATACTCTGCAACATATTGAGTCATTTAGGGATTCATTGTGTGTTTTCCCACCGAAGAGTGTAAAGCTAAGAAAACCATTTGCAATCAAACCCTGGATCAACTCAGAGAAGAATGTTGGCAATCTTCTCATGGTTTGGAGATTTTTTATTACTTTTGCTGATGTTCTGGAGTTATGGTCCTTTACTCTAGATGAGTTTGTTCAAGCATTTCATGACTATGATTCAAGATTATTGGGTGAGATTCATGTTGCTCTTCTTAAGGTGGTAATAAAAGACATTGAAGATGTTGCAAGGACACCTTCTACAGGATTAGGAGTGAATCAAAATGGTGCTGCTAACTCCGGAGGTGGTCATCCAGAGATTGTGGAAGGGGCTTATGCATGGGGTTTTGACATACGGAATTGGCATAAGCACTTGAATCTATTGACATGGCCAGAAATTTTTCGACAGCTAGCTTTATCTGCAGGATATGGACCACAGTTGAAGAAAAGAAGTATTACCTGGTCATATGGAAATAATAAAGACGAGGGAAGAAGTTGTGAAGATATCATTTCTAAACTTCGTAATGGTTCAGCGGCTGAAAATGCAGTTGCAAAAATGCATGAGAGAGGTCTGTTAGCCCCTCGAAGATCTAGACATCGATTAACTCCTGGTACAGTTAAATTTGCTGCATTTCATGTTCTATCCCTTGAGGGTGACAAGGGATTGACAGTACTAGAGCTTGCAGAAAAAATTCAGAAATCTGGTCTTCGAGACCTGACAACCAGCAAGACACCCGAGGCATCAATTTCTGTTGCTTTAACAAGAGATACCAAGCTTTTTGAAAGAATAGCTCCGTCAACATATTGTGTACGTCAGGCATTTAGAAAGAACCCTGCTGATGCCGAGTCTATTCTTTCAGAAGCAAGAAAGAAAATTCAGATATTTGAAAATGGGTTTCTAGCCGAGGAGGATACTGATGATGTTGAAAGAGAAGAGTCAGAAAGTGACGAAATTGATGAGGACCCTGAAGTTGATGATTTGGTAAATTTGTCAAGTGCTAACAAAACATCTGAACCGTGTAATGATGTCTCATCAAATGGAAAAGAAAATTTGGGCCATGATGTTGAACTTCAAGGTGAGTTTGATAAGGATCTGCCTCGTTTTCCTGAGAGTGGTTCCAAGAAGGTTGATGCTCCAATTGCTGTAACTGGGAAACCTGGTGCTTGTGAAGATCTGAATGTTGGAAACCTTGGTGAAGATAATATGGAAATTGATGAAAGCAAGCCTGGAGAGTCATGGGTTCAAGGGCTTGCAGAAGGAGAATATTCTGACCTCAGTGTAGAGGAGCGTCTAAATGCTCTTGTTGTGTTGGTTGGTGTGGCAAATGAAGGAAATTCAATCCGTGTTGTTCTGGAGGATCGTTTGGAAGCAGCAAATGCTCTGAAGAAACAAATGTGGGCAGAAGCTCAACTGGATAAATTTCGATTAAAAGATGATATATTCAGTAAATCCGATTTTCCATCTATCAATGGGAATAAAGTTGAAATACAATATGCTTGTCCTGCCATGGAGGGAAACCAGAGCCCATTGCTTGGCATTAATATTGGCAACAATAGTAATAATGTGCCCTCTCCCAGCACTGCAGAAAATCAAAAAGCAGCTCCAGGTGTAGAGAGTATGACTATTGAAAAACACTCTTCAGTTCAAGATCTCTGCACTGGCCCAGATAACCCTCAGATTCAGTCATTTGCACAATACTCAAAAAGGTCACGGTCTCAGCTGAAATCTTATATTTTCCACATAGCCGAGGAGATGTGTGCCTACAGATCCTTACCCCTTGGACAAGATCGAAGACGAAACCGTTATTGGCAATTTGTTGCATCTGCTTCTTCCAATGATCCTGGCTCTGGGAGGATCTTTATTGAATATCTTGATGGCAATTGGAGGCTTATTGATACTGAAGAGGCCTTTGATGCACTTCTGAATTCACTTGATTCACGTGGGATTAGGGAATCTCATTTGCGAGTAATGTTGCAAAAGGTTGAGAGTTCCTTTAAGGAAAATGTTCGTAAGAATACACAATGTTCTAAAGTTGGAAGCAGAGGCGAGACATGTGTTAAAAATGAAGCTGACGAAACAGATTCCAGTCCTGATCGCCATACTGGATCTGACAGTCCTAGCAGTACCCTTTGTGGCTTGAACTCTGACAGTTTGGAAACTTCCACATCGTTCAAAATTGAGCTTGGGAAAAGTGACACCGACAAGAAATCTGCCTTGAGAAGGTATCAAGATTTTCAAAAGTGGGCATGGAAAGAATGCTATAACTCATCAATATTATGTGCGATGAAATATGGGAAGAAAAGATGCAAACCTCAGGTTGTCGTCTGTGATATCTGTCTCAACCCTTATTTCTTTGAAGACTCCCACTGCAATTGTTGCCACCGGACTTTTCCCTCAAATAATGGATTTAATTTTTCTAAACATGCATTTCAATGTGGAGACAAATTATCAAAAGATACTTGTATTTTGGATTCGTCTCTTCCTTTACGGACAAGATTGCTCAAGGCCCTGCTAGCTTTTATTGAGGTTTCTATTCCTCCTGAAGCATTTCAATCAAATTGGATCGAAGATATTAGGAGGCATTGGAGTGTGAAGTTGAGCAAATCATCTTCTGTTGAGGAACTGCTACAGATATTGGCCCTACTTGAGAGAGCATTGAAGCGGGACTTTCTATCATCAACCTTCTCGACAACAGGGGAACAGTTGGGTTTGAACACTATGTCAGAGAGTGCTGCACAAACCTCTGCTGATCCTGAATCAGTTGCTGTACTTCCATGGGTTCCACTGACCACTTCAGCCGTGTCTCTGAGACTTTTCGAGTTTGATGAATCAATTGTCTACGTACTGCATGAGAAACCCGAACCCTGTGAGAAGAAAGAAGATAGGCAATTCATAAAGCTTCCTTCAAGATACAATGCATCCAAATCTATTAAAGTGGCTGAACCAGCAGGCTTGGACCGTCATGAATTCATGAAAGTTAAATCTAATCCTATGAAAATTGTGCAAAGCAACAATAAACGAGGACGAGGTAGTTCTGTCAAAGGACGGGGTAAAAATGCATCTAAAACCAAAAAAAGTAATGGCCGTCGTCGCAGTGCTAAGGTTGCTGAGAGTCTAAGTCAAAGGATAAAGCAACAGGGAGGGGGATCACAAGGACAAGCTGGTGGGCGTGGTCGTCGGACAGTTCGGAAAAGGAGAGTGGAGAAAAAGGCTGTTGAAGATCTGTTGCTGGGCCATAGGGGTACCTCTCATAGCTCCAACATTGCTAGAGAATCATTAAGAAACTTGGATGAGGAGTGGGACGATGAAAAGGGAAGTCCCATGACTCCCATCCACATGGGGACTGCTAACATTAGTAACAGCACTGAAGAGGCTGAATCTGATGACAATGGCCAAGCAGTGGAATCTGATGACAATGGCCAAGCAGTGGAATCTGATGACAATGGCCAAGCTGTGGAATATGATCAGGGAAACTGGGAAATAGGTTTTAATGGTAATCCCAGCCGATGGCGGAGGGATTTGGTTGGAATGAGTGATGAAGATGTTGAAGCTTCTGAAGATGACAATCACAATGACAATGGCATTGAAGAGAATGAAGAGGAGGATTCAGAGGCAGATGTTATGAGCGAGGGTTCAGATGGCGCTGCAAACAGAATTGTAAACGAAGAAAGCTCAGACTCGGATGTCTCTGAAGATTCTTCTGAGTAG 5310 0.4294 MEGEACSEGENNRKTGGTDDDSNENNNNNHGISSKIVNSNEGQSKPKRQMKTPFQLETLEKAYAVDNYPSETMRGELSEKLGLSDRQLQMWFCHRRLKDKKDLTSKKLPRKVVAEPLPESPTDDPMLGPPELGNEYGSGSGSGSSPYARVEPMNTVPRGVPVYYESPRTMMENRAIACVEAQLGEPLREDGPILGVEFDPLPPDAFGAPLAVTEQQKLPSFAYDNKIYERHEVRANKAMARTFRDYRSLSSQSGARSDTSGQFSQSHLHDPIEGHARNPHFALGNETLPRIRASQSHFRARLLSQQDKQLIPYQSPTRDDKAGPIRELDTTILNVGTSSHFADHQIVVPENLHAQPSGQVLHNNSATRIEKKRKSDDVRDVEAHEMKIRKEIEKQDNLRRKSEERMRKEIEKQDREKKKEEERLMRERQREEERARREQKREIERREKFLLKENLRAEKMKIREELRKEKEAERRKVALERATARRIAKESMELIEDEQLEMMELAASSKGFSSIIHLDFDTLQHIESFRDSLCVFPPKSVKLRKPFAIKPWINSEKNVGNLLMVWRFFITFADVLELWSFTLDEFVQAFHDYDSRLLGEIHVALLKVVIKDIEDVARTPSTGLGVNQNGAANSGGGHPEIVEGAYAWGFDIRNWHKHLNLLTWPEIFRQLALSAGYGPQLKKRSITWSYGNNKDEGRSCEDIISKLRNGSAAENAVAKMHERGLLAPRRSRHRLTPGTVKFAAFHVLSLEGDKGLTVLELAEKIQKSGLRDLTTSKTPEASISVALTRDTKLFERIAPSTYCVRQAFRKNPADAESILSEARKKIQIFENGFLAEEDTDDVEREESESDEIDEDPEVDDLVNLSSANKTSEPCNDVSSNGKENLGHDVELQGEFDKDLPRFPESGSKKVDAPIAVTGKPGACEDLNVGNLGEDNMEIDESKPGESWVQGLAEGEYSDLSVEERLNALVVLVGVANEGNSIRVVLEDRLEAANALKKQMWAEAQLDKFRLKDDIFSKSDFPSINGNKVEIQYACPAMEGNQSPLLGINIGNNSNNVPSPSTAENQKAAPGVESMTIEKHSSVQDLCTGPDNPQIQSFAQYSKRSRSQLKSYIFHIAEEMCAYRSLPLGQDRRRNRYWQFVASASSNDPGSGRIFIEYLDGNWRLIDTEEAFDALLNSLDSRGIRESHLRVMLQKVESSFKENVRKNTQCSKVGSRGETCVKNEADETDSSPDRHTGSDSPSSTLCGLNSDSLETSTSFKIELGKSDTDKKSALRRYQDFQKWAWKECYNSSILCAMKYGKKRCKPQVVVCDICLNPYFFEDSHCNCCHRTFPSNNGFNFSKHAFQCGDKLSKDTCILDSSLPLRTRLLKALLAFIEVSIPPEAFQSNWIEDIRRHWSVKLSKSSSVEELLQILALLERALKRDFLSSTFSTTGEQLGLNTMSESAAQTSADPESVAVLPWVPLTTSAVSLRLFEFDESIVYVLHEKPEPCEKKEDRQFIKLPSRYNASKSIKVAEPAGLDRHEFMKVKSNPMKIVQSNNKRGRGSSVKGRGKNASKTKKSNGRRRSAKVAESLSQRIKQQGGGSQGQAGGRGRRTVRKRRVEKKAVEDLLLGHRGTSHSSNIARESLRNLDEEWDDEKGSPMTPIHMGTANISNSTEEAESDDNGQAVESDDNGQAVESDDNGQAVEYDQGNWEIGFNGNPSRWRRDLVGMSDEDVEASEDDNHNDNGIEENEEEDSEADVMSEGSDGAANRIVNEESSDSDVSEDSSE* 1770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03064 1769 SMART HOX_1 44 106 IPR001356 GO:0003677
Lapu3g03064 1769 ProSiteProfiles DDT domain profile. 556 615 IPR018501 -
Lapu3g03064 1769 Pfam HB1, ASXL, restriction endonuclease HTH domain 738 806 IPR007759 GO:0006355
Lapu3g03064 1769 MobiDBLite consensus disorder prediction 1 20 - -
Lapu3g03064 1769 SUPERFAMILY Homeodomain-like 33 101 IPR009057 -
Lapu3g03064 1769 Coils Coil 452 483 - -
Lapu3g03064 1769 Pfam DDT domain 558 612 IPR018501 -
Lapu3g03064 1769 MobiDBLite consensus disorder prediction 1234 1248 - -
Lapu3g03064 1769 MobiDBLite consensus disorder prediction 21 51 - -
Lapu3g03064 1769 MobiDBLite consensus disorder prediction 1528 1769 - -
Lapu3g03064 1769 Pfam Homeodomain 45 101 IPR001356 GO:0003677
Lapu3g03064 1769 Coils Coil 381 446 - -
Lapu3g03064 1769 SMART testlast3 556 615 IPR018501 -
Lapu3g03064 1769 Gene3D - 30 104 - -
Lapu3g03064 1769 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 33 1769 IPR044977 GO:0006357
Lapu3g03064 1769 MobiDBLite consensus disorder prediction 865 884 - -
Lapu3g03064 1769 ProSiteProfiles HARE-type HTH domain profile. 738 807 IPR007759 GO:0006355
Lapu3g03064 1769 MobiDBLite consensus disorder prediction 865 882 - -
Lapu3g03064 1769 CDD homeodomain 47 101 IPR001356 GO:0003677
Lapu3g03064 1769 ProSiteProfiles 'Homeobox' domain profile. 42 102 IPR001356 GO:0003677
Lapu3g03064 1769 MobiDBLite consensus disorder prediction 1646 1661 - -
Lapu3g03064 1769 MobiDBLite consensus disorder prediction 392 439 - -
Lapu3g03064 1769 MobiDBLite consensus disorder prediction 114 152 - -
Lapu3g03064 1769 MobiDBLite consensus disorder prediction 1 55 - -
Lapu3g03064 1769 MobiDBLite consensus disorder prediction 1220 1248 - -
Lapu3g03064 1769 MobiDBLite consensus disorder prediction 835 858 - -
Lapu3g03064 1769 MobiDBLite consensus disorder prediction 1625 1640 - -
Lapu3g03064 1769 MobiDBLite consensus disorder prediction 1572 1586 - -
Lapu3g03064 1769 MobiDBLite consensus disorder prediction 1714 1742 - -
Lapu3g03064 1769 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1123 1195 IPR028941 -
Lapu3g03064 1769 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 944 986 IPR028942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03064 Lapu-Chr3 53852984 53864667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03064 38 1700 Homeobox Transcription Factor Family AT1G28420 47.436 0.0 1305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Lapu3g03064 WSD 2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03064 - - gmx:100818817 2706.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03064 3 53852984 53864667 Lapu3g03064 3 53852984 53864667 ECH
Lapu3g03064 3 53852984 53864667 Lapu6g01287 6 12726145 12735618 PCT