Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03048 ATGGACGCAAGCAGGTCCGAGGGAAAGAGGGTCTTGAGGTACAACGAGCAGGAGGAGGATGAAGAAGAAGACGAAGAGGAAGAGGGTGACATGGGTTTTGGAGAAGATGGAAGGAGGAATAAGAGAGTAACAGATCTCTATGGAAAGAAAGGGTCCAAAGCTGGAGGCTCAATGCCACCTTCTTGTCAGGTGGATAATTGTGATGCTGATCTAAGTGAAGCTAAACAGTATCACAGAAGGCACAAGGTTTGTGAGTACCATGCCAAGGCTCATTCCGTACACATGGCAGGGCTGCAACAAAGGTTTTGCCAACAATGTAGCAGGTTATTCCATGAGCTGTCTGAATTTGATGATTCAAAGAGGAGTTGTAGAACACGATTGGTTGGCCATAATGAGAGGCGTCGCAAAAATGCAGTTGATTATCGAGGAGAATGA 435 0.4621 MDASRSEGKRVLRYNEQEEDEEEDEEEEGDMGFGEDGRRNKRVTDLYGKKGSKAGGSMPPSCQVDNCDADLSEAKQYHRRHKVCEYHAKAHSVHMAGLQQRFCQQCSRLFHELSEFDDSKRSCRTRLVGHNERRRKNAVDYRGE* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03048 144 Gene3D - 52 124 IPR036893 GO:0003677|GO:0005634
Lapu3g03048 144 MobiDBLite consensus disorder prediction 17 31 - -
Lapu3g03048 144 PIRSF SBP 1 144 IPR017238 GO:0003677|GO:0003700|GO:0009908
Lapu3g03048 144 FunFam Squamosa promoter-binding-like protein 14 53 124 - -
Lapu3g03048 144 Pfam SBP domain 62 136 IPR004333 GO:0003677
Lapu3g03048 144 SUPERFAMILY SBT domain 60 141 IPR036893 GO:0003677|GO:0005634
Lapu3g03048 144 ProSiteProfiles Zinc finger SBP-type profile. 59 137 IPR004333 GO:0003677
Lapu3g03048 144 MobiDBLite consensus disorder prediction 1 16 - -
Lapu3g03048 144 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 30 138 IPR044817 GO:0003677
Lapu3g03048 144 MobiDBLite consensus disorder prediction 32 48 - -
Lapu3g03048 144 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03048 Lapu-Chr3 53690204 53692766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03048 48 140 SBP-box Gene Family AT2G33810 64.516 1.67e-37 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lapu3g03048 SBP 3.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03048 - - gmx:100527199 217.238
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03048 3 53690204 53692766 Lapu6g01272 6 12559462 12561466 PCT