Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03043 ATGGACAAATATCTGGTGCCATTTTCAGGAACCACCACCAACTCATTAATCCCCAATAACTCTCGTACTACATCATCTTCTTCGAACATAATAAGCCTTGCACAACAAAACATGGGAGAACTACAAAATGTCAACTCCGCTGTTGACAACAGTGGACAAGTTGGCTTTCCTGACCCTTATTATGCTCCATATGATCAAAACATACAGTTCCAACAAGTAAATCAATATCCTTATAATACCTTTTCAATAGGACAACCCAATGAAATTTACGGATCACCAAATTCTGAAGTTCAAGGGTGGTCACATCCAGAGGAAGAAGAACATAGGAAGAGTATGGGATTGACTACCAAGGTTGCTAGGGACAAAAGGAAACAAGTAAGGCAGAAGAATAAAAGTTTTGGTCCTATGGCTCCTTTGGCACCAACTAAAGGAACAAAAGGAATAATAAGGGAACAACTTGTTCCCGGAGAAGAATCGGTTGGAAAGATCGCTATCAACCAAGATAGAACTATCAATGTTTTTTGCAGTCCAAATGGAAAGAAGTTAGAAGAAATTTTCACAAAGCAATTGAAGAATAGTGATGTCAGTGTCTTAGGTCGTATTGTGCTCCCAAAGAGGGAGGTTGAGGCAAAGCTTCCACCATTGACTGACAAGGAAGGAAAGGATATTATGCTTAAGGATGTTCATTCTGGGTTGATATGGACCTTGAAATACAAGTATTGGTCTAATAACAGAAGTAGAATGTATGTTCTCGAAAATGCTGGGGAACTTGTGAACCATTATGAACTACAAATGGGGGATTTTATAACCATTTACGAGGATGAATGGAAAAATCTGTATGTATGGGCTAGAAAAAAGATAAATCTAGAACCACTGGTATCTTTCTCAAACACAGAAAGCTTGCATACAAACGACTCTGACAACCATAGCGACAAGCATACATATGATTATGCGAAGCAATCTATGAATGAAGATGCATGCTTGGATCTTTTCACAAAGGAGCTTAACCATAAGGAAGAAGTTGAAGATGCTAAAAATCTTTTGACTTCATTTAATGGGAGTGGAAGTTCTTCACATGGAGCAAAATTAGATATGAATATGGCACAACATGAAGAATTGTCAAACATTGTTGGGAAAGGGGCACCTAGGCAAACATATGCAGAAGCCACACCAGTAGCACCAATAATACCCAATGGTGGCCATAACATGTCAAAAAGTGATGAAGATGTCTACGGAGGCCTTGAAAATATCTTCGAAATTGAGAATACATTTCATAGTTTTGGTCACTTGAAAGATTACAATACATGGCCTTATTCAAATTATGATCGTAACATTTAA 1338 0.3797 MDKYLVPFSGTTTNSLIPNNSRTTSSSSNIISLAQQNMGELQNVNSAVDNSGQVGFPDPYYAPYDQNIQFQQVNQYPYNTFSIGQPNEIYGSPNSEVQGWSHPEEEEHRKSMGLTTKVARDKRKQVRQKNKSFGPMAPLAPTKGTKGIIREQLVPGEESVGKIAINQDRTINVFCSPNGKKLEEIFTKQLKNSDVSVLGRIVLPKREVEAKLPPLTDKEGKDIMLKDVHSGLIWTLKYKYWSNNRSRMYVLENAGELVNHYELQMGDFITIYEDEWKNLYVWARKKINLEPLVSFSNTESLHTNDSDNHSDKHTYDYAKQSMNEDACLDLFTKELNHKEEVEDAKNLLTSFNGSGSSSHGAKLDMNMAQHEELSNIVGKGAPRQTYAEATPVAPIIPNGGHNMSKSDEDVYGGLENIFEIENTFHSFGHLKDYNTWPYSNYDRNI* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03043 445 SMART B3_2 186 287 IPR003340 GO:0003677
Lapu3g03043 445 CDD B3_DNA 185 281 IPR003340 GO:0003677
Lapu3g03043 445 Gene3D - 175 291 IPR015300 -
Lapu3g03043 445 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 73 335 IPR044800 GO:0003700
Lapu3g03043 445 Pfam B3 DNA binding domain 186 286 IPR003340 GO:0003677
Lapu3g03043 445 ProSiteProfiles B3 DNA-binding domain profile. 186 287 IPR003340 GO:0003677
Lapu3g03043 445 SUPERFAMILY DNA-binding pseudobarrel domain 185 284 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03043 Lapu-Chr3 53629140 53632085 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03043 178 280 B3 DNA Binding Superfamily AT1G28300 61.165 2.18e-35 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lapu3g03043 B3 4e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03043 K09287 - gmx:106797573 287.345