Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03042 ATGGCCGCACCTTCGCTTTCCTCTGCTCTCAATTCCCTCTCTCTCTCCGCCTCTTCCCGCTTCTCTCTCCTCCCCTCACCACCCCACACCGTCTCTCTCCTCTTCGCCAAACCCCAACACCACCCCTCCTCCCTCCTCTGCGCCAAATCCAAACCCTCCGACGACATTGACACCTCCTTCTTCGACAACCTCAACCCGCAGGAAGACATCGAATTCAACCCCCCGGAGCCACCGGAGGGCTTCGTCGCCCCTCCCTCCTTCGACGATGGCCCCCTCGAGACGGAGGAGGAGATCGCCGCCGCCTACGAGGAACTCTACGGCCCCGCCTTCAGCGGCATCTCCGTACTCGGGAACGACGTCTTCGAGACGGACGCCCTGGTGAAGAAGGACACGGGGTTCGGGTCCGGCGGGAAGAAGGAGAAGGTCCGTGACGGGTTCGAAGAGAGGGTGGTCCAGGTGAGGAGGGTGACGAAGGTTGTTAAGGGAGGGAAGCAGTTGCGCTTCAGGGCTGTCGTCATTGTCGGCGACAAGAAGGGCCAAGTCGGCGTCGGAGTTGGCAAGGCCAAGGAAGTCATCGCCGCCGTTCAGAAGTCCGCCACCAATGCCAGGAGGAACATCGTCAAGGTGCCTATGACAAAGTATTCCACTTTTCCCCACAGATCTGAGGGAGATTATGGAGCAGCGAAGGTGATGCTTAGACCAGCTTCTCCCGGTACTGGAGTTATTGCAGGTGGGGCTGTGAGAATTGTTCTTGAAATGGCAGGAGTTGAAAATGCTTTGGGAAAGCAACTAGGGAGTAACAATGCACTCAACAATGCCAGAGCAACCGTTATTGCTGTGCTGAAAATGAAGCAGTTTCGTGAGGTTGCTCAGGAACGCGGTATTCCAATGGAAGAATTATGGAAGTAA 909 0.5688 MAAPSLSSALNSLSLSASSRFSLLPSPPHTVSLLFAKPQHHPSSLLCAKSKPSDDIDTSFFDNLNPQEDIEFNPPEPPEGFVAPPSFDDGPLETEEEIAAAYEELYGPAFSGISVLGNDVFETDALVKKDTGFGSGGKKEKVRDGFEERVVQVRRVTKVVKGGKQLRFRAVVIVGDKKGQVGVGVGKAKEVIAAVQKSATNARRNIVKVPMTKYSTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVIAVLKMKQFREVAQERGIPMEELWK* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03042 302 SUPERFAMILY dsRNA-binding domain-like 142 211 - -
Lapu3g03042 302 FunFam 30S ribosomal protein S5 135 207 - -
Lapu3g03042 302 Hamap 30S ribosomal protein S5 [rpsE]. 127 299 IPR005712 GO:0003735|GO:0006412|GO:0015935
Lapu3g03042 302 Gene3D - 212 301 IPR014721 -
Lapu3g03042 302 ProSiteProfiles S5 double stranded RNA-binding domain profile. 146 209 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lapu3g03042 302 Pfam Ribosomal protein S5, C-terminal domain 223 293 IPR005324 GO:0003735|GO:0005840|GO:0006412
Lapu3g03042 302 PANTHER MITOCHONDRIAL RIBOSOMAL PROTEIN S5 139 297 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lapu3g03042 302 SUPERFAMILY Ribosomal protein S5 domain 2-like 216 294 IPR020568 -
Lapu3g03042 302 Gene3D - 142 208 - -
Lapu3g03042 302 FunFam 30S ribosomal protein S5 211 302 - -
Lapu3g03042 302 Pfam Ribosomal protein S5, N-terminal domain 146 210 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lapu3g03042 302 ProSitePatterns Ribosomal protein S5 signature. 163 195 IPR018192 -
Lapu3g03042 302 NCBIfam 30S ribosomal protein S5 145 299 IPR005712 GO:0003735|GO:0006412|GO:0015935
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03042 146 302 Cytoplasmic Ribosomal Protein Gene Family AT2G41840 29.697 3.31e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03042 K02988 - gmx:100787105 417.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03042 3 53618279 53620746 Lapu3g03042 3 53618279 53620746 ECH