Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03036 ATGGAGAACAACCCTAGTTCATCAAGTGATAGAAAATTTGTTGAGAGGGATAGAAGAAATCAGATGAAGGATCTTTTCTCCAAGCTCAAGTCAGTTCTGCCCACAAGGGAGGGGATTTCGCGGCCTGATCAGATAGGTGAAGCCACAGACTACATAAAGAATTTACAGATTAAGTTGGAGAAAATGAAAGAGAGAAAGAACAACCTAACAGACACTGAAAGGTCAAGAAATGCTGGCATGAATATGGGGTTGAAATCTCCACAATTTAAGATCCAACAAATGGGTTCAGCCTTGGAGGTTGTTCTAGTTACTGCGTTGGATTGTCAATTCATGTTCAATGACACCATTCGTATTCTTCAAGAAGAAGGATCAGATATAGTAAATGCCAGTTATACAGTTGTTGAAAATGCAGTTTTCCATACAATTCACTGTCAGGTTGATGAATCTGCCAATGGAGCTTCGAGGATATCGGAGAAACTGAAGAATTATGCCAATGGTCGGTAG 504 0.4008 MENNPSSSSDRKFVERDRRNQMKDLFSKLKSVLPTREGISRPDQIGEATDYIKNLQIKLEKMKERKNNLTDTERSRNAGMNMGLKSPQFKIQQMGSALEVVLVTALDCQFMFNDTIRILQEEGSDIVNASYTVVENAVFHTIHCQVDESANGASRISEKLKNYANGR* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03036 167 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 12 69 IPR036638 GO:0046983
Lapu3g03036 167 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 55 IPR011598 GO:0046983
Lapu3g03036 167 Gene3D - 5 85 IPR036638 GO:0046983
Lapu3g03036 167 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 8 162 - -
Lapu3g03036 167 Pfam Helix-loop-helix DNA-binding domain 14 56 IPR011598 GO:0046983
Lapu3g03036 167 Coils Coil 45 72 - -
Lapu3g03036 167 SMART finulus 12 61 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03036 Lapu-Chr3 53555511 53556714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03036 6 166 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 43.258 2.71e-42 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu3g03036 HLH 3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03036 - - gmx:100810793 266.544