Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03028 ATGCAAAGTCAACAAACAGAGAAAGAAGAAGACGATGAAGGCCCACCACCGGGGTGGCAGCCAATCTCCGCTCCTCCACCGCCACCGCCACCGCCACTGCAACCACAACCGCAACCGCCACTGCAACCGCAACCGCCACCGCCACGTCCATGTGGTTGGGTTCAGATGGTTTGCGGTTCTTGTCATCGCCTGCTTTCATATCCACAAGGTGCCAAACATGTTAAGTGTTCATGCTGTGAGACTGTCAACATTGTATTAGAAGCTGATCAGGTTGGGCAAGTTAAGTGTGGCAGTTGTGCAGTATTGCTAATGTACCCATATGGTGCTTCACAAGTTAGATGTTCCTCATGCCAGTTTGTGACAGAAATTGGGGCACACAACAAGCGGCCTCCGTGGTCTGTACAACAAAGGAAACCAATTCCTGCAAAATCTGGTTGTTAG 441 0.5079 MQSQQTEKEEDDEGPPPGWQPISAPPPPPPPPLQPQPQPPLQPQPPPPRPCGWVQMVCGSCHRLLSYPQGAKHVKCSCCETVNIVLEADQVGQVKCGSCAVLLMYPYGASQVRCSSCQFVTEIGAHNKRPPWSVQQRKPIPAKSGC* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03028 146 Pfam LSD1 zinc finger 96 120 IPR005735 -
Lapu3g03028 146 Pfam LSD1 zinc finger 58 82 IPR005735 -
Lapu3g03028 146 MobiDBLite consensus disorder prediction 1 15 - -
Lapu3g03028 146 MobiDBLite consensus disorder prediction 18 48 - -
Lapu3g03028 146 NCBIfam zinc finger domain, LSD1 subclass 55 85 IPR005735 -
Lapu3g03028 146 NCBIfam zinc finger domain, LSD1 subclass 93 121 IPR005735 -
Lapu3g03028 146 PANTHER PROTEIN LSD1 25 143 IPR040319 -
Lapu3g03028 146 MobiDBLite consensus disorder prediction 1 48 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Lapu3g03028 zf-LSD1 3.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03028 - - gmx:100780865 210.69