Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03026 ATGGCCTTTGAGCACTGCGTTTCGAAGCAATGGAAAACCATCCCAGGCCCCGTGACTGTGACAGAAGATTTTGATGGGTGTTTTGATTGCAACATCTGCTTAGATTTTGCACATGAACCAGTTGTTACCCTCTGTGGCCACCTATACTGCTGGCCGTGCATCTACAAGTGGCTCCATGTCCAAAGTGCTTCTCTTGCACCTGATGAGCACCCGCAATGCCCTGTTTGCAAGGAAGATATATGCCACACCACAATGGTTCCCCTCTATGGCCGTGGCCAGGCCATAGCTCATAGTGACCGTGATGTGAAGGCTTCCTATAGAGGTGTTTTCATTCCACCAAGACCACCTGCTTTGGGTACTCAATCTCTCATGCCAACATCATCTCAAAGTGGTCAGCAGCTTCCATATCGCAATCCTTATCAGAGTCAGCATTTCAATCCTCCTTTATACCAAGAAGAGGATGAATCATCATCACAAATGATCAATCCTGGTGCCATGGCACCAGGGTTCCCCCACCTTGTGGTTGGGATGTTTGGAGAGATGTTTTATACCCGAGTCTTTGGCAACTCAGAAAATGTATATACTTACCCAAATTCTTATCACCTGGCAGGAAGTAATAGCCCCAGGTTGAGAAGGCAAGAGATGCAGGCAGATAAATCACTGAACAGAATTTCAATCTTTCTCTTCTGTTGCTTCCTTCTTTGTCTCATCGTCTTCTAA 720 0.4639 MAFEHCVSKQWKTIPGPVTVTEDFDGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLAPDEHPQCPVCKEDICHTTMVPLYGRGQAIAHSDRDVKASYRGVFIPPRPPALGTQSLMPTSSQSGQQLPYRNPYQSQHFNPPLYQEEDESSSQMINPGAMAPGFPHLVVGMFGEMFYTRVFGNSENVYTYPNSYHLAGSNSPRLRRQEMQADKSLNRISIFLFCCFLLCLIVF* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03026 239 ProSiteProfiles Zinc finger RING-type profile. 30 77 IPR001841 -
Lapu3g03026 239 Pfam Zinc finger, C3HC4 type (RING finger) 30 76 IPR018957 GO:0046872
Lapu3g03026 239 SUPERFAMILY RING/U-box 22 90 - -
Lapu3g03026 239 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 22 236 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lapu3g03026 239 SMART ring_2 30 76 IPR001841 -
Lapu3g03026 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 106 IPR013083 -
Lapu3g03026 239 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Lapu3g03026 239 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 6 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03026 Lapu-Chr3 53459868 53462447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03026 16 225 C3H Transcription Factor Family AT4G27470 40.000 8.88e-45 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03026 K10666 - gmx:100779793 420.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03026 3 53459868 53462447 Lapu6g01252 6 12325996 12328396 PCT