Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03025 ATGGCGAGTCTGTTTGGCTCATCGTCTTCCGCTCCGTTCAAGATGAAAGTCACCAACACGCCCTCCAGCGACCTCGTTCTCACCAACCTCGCCTTCTGTTCCCCCTCCGATCTTCGCAAATTCGCCGTCCCTGGTCACAACAACCTCTACCTCGCCACCGTCGCCGATTCCTTCGTCCTATCTCTCTCAGATACTGCTCATGACAACATAGGCAGCGACCAGATTGGGTTGAACTCCATTCAACGGCGGTGTGCCAAAGTTTCTTCTGGTGATTCCGTACAATTGACTCGATTTGTGCCTCCCGACGACTTCAACCTGGCACTGCTAACCATTGATTTGGAATTTGTTAAAAAGGGGAATAAGAGTGAACAGATTGATGCTGTTCTACTGGCTAAGCAACTTCGGAAGAGATTCTTAAACCAGGTTATGACTGTGGGGCAAAAAGTGTTATTTGAGTACCATGGAAATAACTATAGCTTTACTGTCAGTCAAGCTGCTGTTGAAGGCCAAGAAAAGTCCAATTCTCTTGAAAGAGGGATGATTTCTGATGATACGTACATTGTTTTTGAAACATCACGTGATAGTGGAATTAAGATTGTCAATCAACGGGAGGGTGCAACTAGCAACATTTTTAAGCAGAAAGAATTTAACCTTCAGTCACTGGGTATTGGTGGCTTGAGTGCAGAATTTGCTGATATATTCCGAAGAGCTTTTGCGTCACGTGTTTTCCCTCCCCATGTGACATCTAAATTAGGAATCAAGCATGTGAAGGGCATGCTTCTTTATGGGCCTCCTGGAACTGGAAAGACACTTATGGCACGTCAAATTGGAAAAATTTTGAATGGGAAGGAACCAAAGATTGTAAATGGCCCTGAAGTTTTGAGCAAATTTGTTGGTGAAACTGAAAAGAATGTGAGAGACCTTTTTGCTGATGCTGAACAGGATCAGAGGACCCGAGGGGATGAAAGTGATTTGCATGTTATAATCTTTGATGAAATTGATGCTATTTGTAAGTCAAGAGGTTCAACTCGAGATGGTACTGGAGTTCATGACAGCATTGTAAATCAGCTTCTTACTAAGATAGATGGTGTGGAGTCACTTAATAATGTTTTGCTTATTGGAATGACTAACAGAAAGGATATGCTTGATGAAGCTCTCTTAAGACCAGGGAGGTTGGAAGTCCAGGTTGAAATAAGCCTTCCTGATGAAAATGGTCGATTGCAAATTCTTCAAATTCATACTAACAAAATGAAAGAGAATTCTTTTCTAGCTCCTGATGTGAACCTTCAAGAGCTTGCTGCTCGAACAAAAAACTACAGTGGTGCTGAACTTGAAGGTGTTGTGAAAAGTGCCGTCTCATATGCATTAAATAGACAATTGAGTCTAGATGATCTCACTAAGCAAGTGGAGGAAGAGAACATTAAAGTTACAATGGATGACTTTTTGAATGCACTCCATGAAGTTATTCCCGCATTTGGTGCTTCAACTGATGATCTTGAAAGATGCAGACTACATGGCATGGTGGAATGTGGGGATCGACATAAACACATTTATCAAAGAGCAATGCTACTTGTGGAGCAAGTTAAAGTGAGTAAAGGAAGCCCACTTGTCACTTGTCTCCTGGAAGGATCCCGTGGCAGTGGTAAAACTGCACTAGCAGCTACTGTTGGTATTGACAGCGATTTCCCATATGTCAAGATAGTTTCAGCTGAAACAATGATTGGTCTACATGAGAGCACCAAATGTGCACAGATTATTAAGGTTTTTGAGGATGCATACAGGTCACCCTTGAGTGTAATAGTTCTTGATGACATTGAGAGATTATTAGAGTATGTGGCCATTGGTCCTCGTTTTTCAAACTTGATTTCTCAGACACTACTGGTTCTGCTGAAACGGCTTCCTCCAAAGGGGAAAAAACTCATGGTTATTGGCACAACAAGTGAACTGGGTTTCTTGGACTCAATTGGATTTTGTGATACCTTCTCTGTTACTTACCACGTTCCTACCTTGAACACAAAGGATGCAAAGAGGGTCCTTGAACAGTTGAATGTGTTCTCTGATGAAGATATTGATTCTGCTGCAGAGGCATTGAATGATATGCCTATCAGGAAGCTATACATGTTGATTGAAATGGCAGCGCAAGGGGAGCAAGGTGGATCTGCAGAGGCCATCTATTCTGGCAAAGAGAAGATTAATATCTCTCATTTCTATGATTGTCTCCAGGATGTTATTAGGTTATAA 2241 0.4212 MASLFGSSSSAPFKMKVTNTPSSDLVLTNLAFCSPSDLRKFAVPGHNNLYLATVADSFVLSLSDTAHDNIGSDQIGLNSIQRRCAKVSSGDSVQLTRFVPPDDFNLALLTIDLEFVKKGNKSEQIDAVLLAKQLRKRFLNQVMTVGQKVLFEYHGNNYSFTVSQAAVEGQEKSNSLERGMISDDTYIVFETSRDSGIKIVNQREGATSNIFKQKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKILNGKEPKIVNGPEVLSKFVGETEKNVRDLFADAEQDQRTRGDESDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVVKSAVSYALNRQLSLDDLTKQVEEENIKVTMDDFLNALHEVIPAFGASTDDLERCRLHGMVECGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGSRGSGKTALAATVGIDSDFPYVKIVSAETMIGLHESTKCAQIIKVFEDAYRSPLSVIVLDDIERLLEYVAIGPRFSNLISQTLLVLLKRLPPKGKKLMVIGTTSELGFLDSIGFCDTFSVTYHVPTLNTKDAKRVLEQLNVFSDEDIDSAAEALNDMPIRKLYMLIEMAAQGEQGGSAEAIYSGKEKINISHFYDCLQDVIRL* 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03025 746 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 500 716 IPR027417 -
Lapu3g03025 746 Gene3D - 209 400 IPR027417 -
Lapu3g03025 746 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 234 498 IPR027417 -
Lapu3g03025 746 Pfam Cell division protein 48 (CDC48), domain 2 124 185 IPR004201 -
Lapu3g03025 746 FunFam Vesicle-fusing ATPase 102 199 - -
Lapu3g03025 746 Pfam ATPase family associated with various cellular activities (AAA) 540 653 IPR003959 GO:0005524|GO:0016887
Lapu3g03025 746 Pfam ATPase family associated with various cellular activities (AAA) 259 399 IPR003959 GO:0005524|GO:0016887
Lapu3g03025 746 SUPERFAMILY Cdc48 domain 2-like 101 204 IPR029067 -
Lapu3g03025 746 Gene3D - 13 98 - -
Lapu3g03025 746 FunFam vesicle-fusing ATPase isoform X1 497 668 - -
Lapu3g03025 746 CDD RecA-like_NSF-SEC18_r1-like 222 398 - -
Lapu3g03025 746 Gene3D - 497 668 IPR027417 -
Lapu3g03025 746 SMART AAA_5 255 402 IPR003593 GO:0016887
Lapu3g03025 746 SMART AAA_5 535 673 IPR003593 GO:0016887
Lapu3g03025 746 Gene3D - 401 488 - -
Lapu3g03025 746 PANTHER VESICULAR-FUSION PROTEIN NSF 13 745 IPR039812 GO:0016887|GO:0035494
Lapu3g03025 746 Pfam AAA+ lid domain 426 481 IPR041569 -
Lapu3g03025 746 ProSitePatterns AAA-protein family signature. 370 388 IPR003960 GO:0005524|GO:0016887
Lapu3g03025 746 FunFam Vesicle-fusing ATPase protein 13 98 - -
Lapu3g03025 746 Gene3D - 102 199 - -
Lapu3g03025 746 FunFam Vesicular-fusion ATPase SEC18 211 401 - -
Lapu3g03025 746 SUPERFAMILY ADC-like 12 98 IPR009010 -
Lapu3g03025 746 FunFam Vesicle-fusing ATPase 401 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03025 Lapu-Chr3 53440482 53453764 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03025 250 466 Calmodulin-binding Proteins AT3G56690 38.914 3.50e-40 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03025 K06027 - gmx:100779259 1352.42