Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03024 ATGGCTGATAAAAATGTGTTAGAGCTGAACCTTGGTTTAGGCAACAACAACAACAACAACGTTGGTGGTCATGCACATGCAGGGCAGTCACCAAGGCAAAGGTGCCCAGCACCATTTCTGTTGAAGACCTACGATTTGCTGGAAGAAGGTGAGGCTGAAGATATCACCAAAATTGTGTCGTGGAATGCAGAAGGAACTGCTTTTGTTGTGTGGTCTCCTGCTGAATTCTCTGAGCTCACCTTGCCTAGATATTTCAAGCACAACAACTTCTCTAGCTTCATTCGCCAGTTGAACACATATGGATTTAAGAAAATATCATCGAAAAGATGGGAATTCAAGCACGAGAAATTTCAGAGGGGTTGCAGGCACATGCTAGGTGAAATCACAAGAAAAAAGTGCGAGCCAAGTGTTTTTCCTGCATACCTCAAGTCTTCTTCTGAGGAAAATGCAACGAGTTCCACAGAAGAAAATAATCAGCAACTACTTATGGAGGAGAACAAGAACCTAAAGAAGGAGAGATTAGAGCTTCAAATGCAGATTGACGAATGCAAAGCACTTGAAATGAAACTGTTGGCATGCCTCTCTCAGTTTATGGAAACCCACCAAAGTAAAATTAGGAGACTGTGTTAA 630 0.4222 MADKNVLELNLGLGNNNNNNVGGHAHAGQSPRQRCPAPFLLKTYDLLEEGEAEDITKIVSWNAEGTAFVVWSPAEFSELTLPRYFKHNNFSSFIRQLNTYGFKKISSKRWEFKHEKFQRGCRHMLGEITRKKCEPSVFPAYLKSSSEENATSSTEENNQQLLMEENKNLKKERLELQMQIDECKALEMKLLACLSQFMETHQSKIRRLC* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03024 209 SMART hsfneu3 35 131 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu3g03024 209 Gene3D - 31 132 IPR036388 -
Lapu3g03024 209 ProSitePatterns HSF-type DNA-binding domain signature. 81 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu3g03024 209 FunFam Heat stress transcription factor A-6b 32 132 - -
Lapu3g03024 209 Pfam HSF-type DNA-binding 39 131 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu3g03024 209 Coils Coil 152 189 - -
Lapu3g03024 209 SUPERFAMILY "Winged helix" DNA-binding domain 36 131 IPR036390 -
Lapu3g03024 209 PRINTS Heat shock factor (HSF) domain signature 93 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu3g03024 209 PRINTS Heat shock factor (HSF) domain signature 39 62 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu3g03024 209 PRINTS Heat shock factor (HSF) domain signature 80 92 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu3g03024 209 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 30 184 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03024 Lapu-Chr3 53431633 53433906 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03024 27 198 HSF AT5G62020 34.804 4.27e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lapu3g03024 HSF_DNA-bind 2.7e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03024 K09419 - gmx:100789792 321.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03024 3 53431633 53433906 Lapu3g03024 3 53431633 53433906 ECH