Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03017 ATGTACGTAGCTTCCATGCGTAAGTCTTTCAAGGACTCCCTGAAAGTCCTTGAAGCTGATATCCAACACGCCAATACCCTGGCGTCAGATTTCCCAAGGGAGTATGATGGTGCATGCCTTCAGATGAGAATGTCATACAGTCCAGCTGCGCACTTGTTTCTTTTCCTGGTGCAATGGACAGATTGTCATCTTGCTGGAGCCCTTGGACTGTTAAGAATCCTAATTTACAAGGTCTATGTGGATGGGACAACCACCATGTCTACACATGAAAGAAAAGCAAGTATTAGAGAATTCTATGCGGTCATTTATCCCTCTTTATTGCAACTTCAAAAAGGTGTCTCTGATACTGAGGATAAGAAGCAAAAGGCTGTATGCATGGAGAGGTATCGCAGAAGAGATGACGAGGATTATAGACAGTCTTCTGACATAGACATTGAAAGAGAAGATGAATGTGGAATATGCATGGACATGAATACTAAGATTGTGTTACCCAACTGCAACCATGCCATGTGCCTGAAATGTTACCGAGAATGGCGAACGATATCACAATCATGCCCATTTTGCCGTGGCAGTCTGAAGAGGGTGAACTCAGGTGATCTGTGGGTATACACTGATAGAAGGGATGTGGTAGATATGGCAACAGTGACAAGGGAGAATCTGAGAAGGCTTTTCATGTACATAGATAAGTTGCCTTTGATTGTTCCAGACTCCCTTTTTGATGCGTATGACTCTCACATAAGAGTTGCAGTACTTGCTTCCCACTTCTGGTGCCAGAAGTATCCAGCCCTTGTCTTATTGTGGGGCTGGTGGTGA 813 0.4416 MYVASMRKSFKDSLKVLEADIQHANTLASDFPREYDGACLQMRMSYSPAAHLFLFLVQWTDCHLAGALGLLRILIYKVYVDGTTTMSTHERKASIREFYAVIYPSLLQLQKGVSDTEDKKQKAVCMERYRRRDDEDYRQSSDIDIEREDECGICMDMNTKIVLPNCNHAMCLKCYREWRTISQSCPFCRGSLKRVNSGDLWVYTDRRDVVDMATVTRENLRRLFMYIDKLPLIVPDSLFDAYDSHIRVAVLASHFWCQKYPALVLLWGWW* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03017 270 ProSitePatterns Zinc finger RING-type signature. 166 175 IPR017907 -
Lapu3g03017 270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 198 IPR013083 -
Lapu3g03017 270 FunFam RING/U-box superfamily protein 129 198 - -
Lapu3g03017 270 Pfam Zinc finger, C3HC4 type (RING finger) 148 194 - -
Lapu3g03017 270 ProSiteProfiles Zinc finger RING-type profile. 151 189 IPR001841 -
Lapu3g03017 270 PANTHER RING FINGER PROTEIN 41, 151 8 246 - -
Lapu3g03017 270 SMART ring_2 151 188 IPR001841 -
Lapu3g03017 270 SUPERFAMILY RING/U-box 140 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03017 Lapu-Chr3 53391873 53396201 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03017 K25840 - gmx:100777318 481.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03017 3 53391873 53396201 Lapu6g01241 6 12237442 12243197 PCT