Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02993 ATGATGAGGCATAGTGGAGCCAAGTATCTCTCCTTCATCACCATTATAAATACACATGCAACTCTCTTTCTCCTCCAACCAATTTCCAATCAGAAGAGGATCTCTCTCAGTCTGATGAGCTTCCATGATATGGATAACATTGTATTAAAGCTGACTAGTTTATACACCTTGCTTCTTTTTCTTTTTCTATCTTATAAGCCTGCTCTTTCATTTTCTTCTAGACATACCCAATATTGGGGTGGTGGGAGGATATTGAGCTCTGGTTATAATGCTGATCTTGTCACTAACTTGCCTGGCCAGCCTAAGGTAAATTTCCAGCACTATGCTGGATATGTCACAGTCAATGAAACCAATGGAAGAGCACTCTTTTACTGGTTCTATGAGGCTATCACCAAGCCAGAAGAGAAACCATTGGTGCTTTGGCTTAATGGAGGTCCTGGGTGCTCTTCTGTGGGATATGGAGCAACACAAGAGATTGGTCCATTTTTAGTGGACACTGATGGCCAGGGCCTCAAATTTAATAACTTCTCATGGAACAGAGAAGCCAGCATGTTATTCCTGGAATCTCCTGTTGGAGTTGGCTTTTCGTACTCAAATACGAGCGGTGACTATGACCAATTGGGAGATGACTTAACAGCTAACGATGCTTACTCTTTTCTTCACAATTGGTTCCTAAAGTTTCCATCATACAGAACGAGGGCGTTTTACATAGCAGGGGAGAGCTACGCAGGAAAGTATGTACCAGAGCTGGCTGAACTCATCCATGATAGGAACAAGGATCCCTCTCTCTATATTGATCTCAAGGGTATTCTGTTAGGTAACCCTGAAACATCTGATGCTGAGGACTGGATGGGCTTGGTTGATTATGCTTGGAGCCATGCAGTGATATCTGACGAAACTCATAAGATAATCAAAACAAGTTGTGACTTTAACAGCACTGATCCATGGCGTAACGAAGATTGTAGTCAAGCTGTGGATGAAGTACTCAAACAATACAACGAAATTGATATCTACAGTCTCTACACCTCTGTCTGCTTTGCCAGTACAGCACGTTCAGACGATCAATTCATGCAAACTTCCATGAAGCTTACATCTAAAATGATGCCTAGGATGTTGGGTGGCTATGATCCATGCCTTGATGACTATGCTAAAGCTTTTTATAATAAACCAGAAGTTCAGAAGGCTCTTCATGCCAGCGATGGTCACAATCTAAAGAATTGGAGCATTTGCAACAACAAGATATTCAATGACTGGGCCGATTCAAAGCCATCTGTTATCCCAATTTACAAGAAACTTATTTCAGCAGGACTTAGGATTTGGGTTTACAGTGGGGACACAGATGGTAGAGTACCAGTGTTGTCCACAAGATACAGCTTAAGCTCTCTTGCGTTGCCTGTCACTAAGTCATGGAGGCCTTGGTACCATGAAAATGAGGTCAGTGGATGGTTTGAAGAATATGAGGGGCTTACGTTTGCAACGTTTCGAGGAGCTGGGCATGCAGTTCCCTGTTTTAAACCAAGCAATTCACTTGCGTTCTTCACTTCCTTTCTGAATGGAGAATCACCACCTTCTACAAAATAA 1581 0.4238 MMRHSGAKYLSFITIINTHATLFLLQPISNQKRISLSLMSFHDMDNIVLKLTSLYTLLLFLFLSYKPALSFSSRHTQYWGGGRILSSGYNADLVTNLPGQPKVNFQHYAGYVTVNETNGRALFYWFYEAITKPEEKPLVLWLNGGPGCSSVGYGATQEIGPFLVDTDGQGLKFNNFSWNREASMLFLESPVGVGFSYSNTSGDYDQLGDDLTANDAYSFLHNWFLKFPSYRTRAFYIAGESYAGKYVPELAELIHDRNKDPSLYIDLKGILLGNPETSDAEDWMGLVDYAWSHAVISDETHKIIKTSCDFNSTDPWRNEDCSQAVDEVLKQYNEIDIYSLYTSVCFASTARSDDQFMQTSMKLTSKMMPRMLGGYDPCLDDYAKAFYNKPEVQKALHASDGHNLKNWSICNNKIFNDWADSKPSVIPIYKKLISAGLRIWVYSGDTDGRVPVLSTRYSLSSLALPVTKSWRPWYHENEVSGWFEEYEGLTFATFRGAGHAVPCFKPSNSLAFFTSFLNGESPPSTK* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02993 526 PRINTS Carboxypeptidase C serine protease (S10) family signature 187 197 IPR001563 GO:0004185|GO:0006508
Lapu3g02993 526 PRINTS Carboxypeptidase C serine protease (S10) family signature 223 248 IPR001563 GO:0004185|GO:0006508
Lapu3g02993 526 PRINTS Carboxypeptidase C serine protease (S10) family signature 489 502 IPR001563 GO:0004185|GO:0006508
Lapu3g02993 526 PRINTS Carboxypeptidase C serine protease (S10) family signature 174 186 IPR001563 GO:0004185|GO:0006508
Lapu3g02993 526 FunFam Carboxypeptidase 89 347 - -
Lapu3g02993 526 Gene3D alpha/beta hydrolase 88 347 IPR029058 -
Lapu3g02993 526 Pfam Serine carboxypeptidase 98 519 IPR001563 GO:0004185|GO:0006508
Lapu3g02993 526 Gene3D - 378 414 - -
Lapu3g02993 526 Gene3D - 425 519 - -
Lapu3g02993 526 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 93 506 IPR001563 GO:0004185|GO:0006508
Lapu3g02993 526 FunFam Carboxypeptidase 425 519 - -
Lapu3g02993 526 FunFam Carboxypeptidase 375 521 - -
Lapu3g02993 526 ProSitePatterns Serine carboxypeptidases, serine active site. 237 244 IPR018202 GO:0004185
Lapu3g02993 526 SUPERFAMILY alpha/beta-Hydrolases 91 520 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02993 Lapu-Chr3 53108168 53112365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02993 383 520 Calmodulin-binding Proteins AT2G22960 34.532 9.80e-18 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02993 K16297 - gmx:100815993 932.169